Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

Documentation for package ‘ouch’ version 2.9-2

Help Pages

ouch-package	Ornstein-Uhlenbeck methods for comparative phylogenetic hypotheses
anolis.ssd	Greater Antillean anolis lizard sexual size dimorphism data.
ape2ouch	Convert an "ape" tree to an "ouch" tree.
as-method	Methods of the "hansentree" class
bimac	Anolis bimaculatus lizard size data.
bootstrap	Methods of the "hansentree" class
bootstrap-browntree	Fitted phylogenetic Brownian motion model
bootstrap-hansentree	Methods of the "hansentree" class
bootstrap-method	Fitted phylogenetic Brownian motion model
bootstrap-method	Methods of the "hansentree" class
brown	Fit a Brownian-motion model of evolution along a phylogenetic tree
browntree	Fitted phylogenetic Brownian motion model
browntree-class	Fitted phylogenetic Brownian motion model
coef-browntree	Fitted phylogenetic Brownian motion model
coef-hansentree	Methods of the "hansentree" class
coef-method	Fitted phylogenetic Brownian motion model
coef-method	Methods of the "hansentree" class
coerce-method	Fitted phylogenetic Brownian motion model
coerce-method	Methods of the "hansentree" class
coerce-method	Phylogenetic tree object in 'ouch' format.
hansen	Hansen model of evolution along a phylogenetic tree
hansentree	hansen tree object
hansentree-class	hansen tree object
hansentree-methods	Methods of the "hansentree" class
logLik-browntree	Fitted phylogenetic Brownian motion model
logLik-hansentree	Methods of the "hansentree" class
logLik-method	Fitted phylogenetic Brownian motion model
logLik-method	Methods of the "hansentree" class
ouchtree	Phylogenetic tree object in 'ouch' format.
ouchtree-class	Phylogenetic tree object in 'ouch' format.
paint	Painting selective regimes on a phylogenetic tree.
plot-browntree	Fitted phylogenetic Brownian motion model
plot-hansentree	Methods of the "hansentree" class
plot-method	Fitted phylogenetic Brownian motion model
plot-method	Methods of the "hansentree" class
plot-method	Phylogenetic tree object in 'ouch' format.
plot-ouchtree	Phylogenetic tree object in 'ouch' format.
print-browntree	Fitted phylogenetic Brownian motion model
print-hansentree	Methods of the "hansentree" class
print-method	Fitted phylogenetic Brownian motion model
print-method	Methods of the "hansentree" class
print-method	Phylogenetic tree object in 'ouch' format.
print-ouchtree	Phylogenetic tree object in 'ouch' format.
show-browntree	Fitted phylogenetic Brownian motion model
show-hansentree	Methods of the "hansentree" class
show-method	Fitted phylogenetic Brownian motion model
show-method	Methods of the "hansentree" class
show-method	Phylogenetic tree object in 'ouch' format.
show-ouchtree	Phylogenetic tree object in 'ouch' format.
simulate-browntree	Fitted phylogenetic Brownian motion model
simulate-hansentree	Methods of the "hansentree" class
simulate-method	Fitted phylogenetic Brownian motion model
simulate-method	Methods of the "hansentree" class
summary-browntree	Fitted phylogenetic Brownian motion model
summary-hansentree	Methods of the "hansentree" class
summary-method	Fitted phylogenetic Brownian motion model
summary-method	Methods of the "hansentree" class
update-browntree	Fitted phylogenetic Brownian motion model
update-hansentree	Methods of the "hansentree" class
update-method	Fitted phylogenetic Brownian motion model
update-method	Methods of the "hansentree" class