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| add_pcoord | Principle coordinate analysis of phylogenies |
| coordpcoa | Internal fucntion of add_pcoord performing pricipal coordinate analysis |
| gl_links | Gopher/lice phylogenies |
| gophertree | Gopher phylogeny |
| licetree | Lice phylogeny |
| PACo | Performs PACo/procustes analysis |
| paco_links | Contribution of individual links |
| prepare_paco_data | Prepare the data Simple wrapper to make sure that the matrices are sorted accordingly |
| residuals.paco | Get procrustes residuals from a paco object |