Additive partially linear models for differential gene expression analysis

Documentation for package ‘plmDE’ version 1.0

plmDE-package	Generalized Additive Partially Linear Models for Gene Expression Data
fitBspline	Compute B-Spline Basis for Data
fitGAPLM	Fit a Generalized Additive Partially Linear Model on Gene Expression Data
head.DEresults	Preview of Data in 'DEresults' object
head.plmDE	Preview of 'plmDE' object
hist.DEresults	Create a Histogram of P-values
info	Information about an Object
info.plmDE	Obtain Information about 'plmDE' object
limmaPLM	Adapt Additive Partially Linear Models for Testing via 'limma'
mostDE	Find Genes with the Most Evidence for Differential Expression
plmDE	Generalized Additive Partially Linear Models for Gene Expression Data
plmDEmodel	Constructor for objects of type 'plmDE'
plmDEmodel.default	Creates a class to hold Expression Data and Other Measurements
plot.DEresults	Plot Fit of 'DEresults' Model