Minimal Protein Set Explaining Peptide Spectrum Matches

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Documentation for package ‘prozor’ version 0.1.1

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prozor-package Minimal Protein set Explaining Peptides
annotatePeptides annotate peptides with protein ids
greedy given matrix (columns protein rows peptides), compute minimal protein set using greedy algorithm
pepdata Table containing peptide information
prepareMatrix given table of peptide protein assigments generate matrix
protpepmeta Generated from pepdata using method annotatePeptides
protpepmetashort Small version of prot meta dataset to speed up computation
prozor Minimal Protein set Explaining Peptides