Range Ancestral State Estimation for Phylogeography and Comparative Analyses

Documentation for package ‘rase’ version 0.2-22

rase-package	Range Ancestral State Estimation
add.dens	Plot the Posterior Density for each Ancestor in 3D Space
add.polygons	Plot the Distributions for the Phylogenetic Tips in 3D
bm_ase	Bayesian Ancestral State Estimation with Points
data.for.3d	Transform Output for 3D Plotting
mcmc	Psophia Data Used for rase Package
name.poly	Name & Order Polygons According to the Phylogeny
phylo.3d	Plots a Phylogenic Tree in 3D
point.like.bm	n-dimensional Maximum Likelihood of Point Brownian Motion
post.mcmc	Post-MCMC Handling
psophia_poly	Psophia Data Used for rase Package
psophia_shp	Psophia Data Used for rase Package
psophia_tree	Psophia Data Used for rase Package
ranges.like.bm	n-dimensional Maximumn Likelihood of Range Brownian Motion
rase	Bayesian Range Ancestral State Estimation of Polygons
rase.slice	Ancestral State Estimation At Any Given Time Slice
shape.to.rase	Transform a Shapefile into 'owin.object' Format
tree.slice	Identify Tree Branches That Intersect With a Given Time Slice.