Detect and Remove Unwanted Variation using Negative Controls

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Documentation for package ‘ruv’ version 0.9.6

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ruv-package Detect and Remove Unwanted Variation using Negative Controls
getK Get K
get_empirical_variances Get empirical variances
inputcheck1 Input Check One
invvar Inverse Method Variances
randinvvar (Randomization) Inverse Method Variances
residop Residual Operator
ruv Detect and Remove Unwanted Variation using Negative Controls
RUV1 RUV-1
RUV2 Remove Unwanted Variation, 2-step
RUV4 Remove Unwanted Variation, 4-step
RUVinv Remove Unwanted Variation, inverse method
RUVrinv Remove Unwanted Variation, ridged inverse method
sigmashrink Empirical Bayes shrinkage estimate of sigma^2
variance_adjust Adjust Estimated Variances