Solving Mixed Model Equations in R

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Documentation for package ‘sommer’ version 1.3

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A.mat Additive relationship matrix
adiag1 Binds arrays corner-to-corner
AI Average Information Algorithm
AI2 Average Information Algorithm
AI3 Average Information Algorithm
anova.mmer anova form a GLMM fitted with mmer
atcg1234 Letter to number converter
bag Creating a fixed effect matrix with significant GWAS markers
bathy.colors Generate a sequence of colors for plotting bathymetric data.
coef.mmer coef form a GLMM fitted with mmer
cornHybrid Corn crosses and markers
CPdata Genotypic and Phenotypic data for a CP population (F1; cross between 2 highly heterozygote individuals; i.e. humans, fruit crops, bredding populations in recurrent selection).
D.mat Dominance relationship matrix
design.score design score for the model to be tested
E.mat Epistatic relationship matrix
EM Expectation Maximization Algorithm
EMMA Efficient Mixed Model Association Algorithm
fdr False Discovery Rate calculation
fitted.mmer fitted form a GLMM fitted with mmer
HDdata half diallel data for corn hybrids
hdm Half Diallel Matrix
jet.colors Generate a sequence of colors alog the jet colormap.
map.plot2 Creating a genetic map
mmer Mixed Model Equations in R
mmer2 Mixed Model Equations in R 2
plot.mmer plot form a GLMM plot with mmer
poe Short poems from Latin America, and other places why not?
PolyData Genotypic and Phenotypic data for a potato polyploid population
print.mmer summary form a GLMM fitted with mmer
print.summary.mmer summary form a GLMM fitted with mmer
randef extracting random effects
residuals.mmer Residuals form a GLMM fitted with mmer
score.calc Score calculation for markers
sommer Solving Mixed Model Equations in R
summary.mmer summary form a GLMM fitted with mmer
transp Creating color with transparency
wheatLines wheat lines dataset