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| AA_Example_ATestMaxAndMedians | Utility: Sample Data |
| aa_getATestResults | Technique 1: Aleatory Analysis |
| aa_graphATestsForSampleSize | Internal Functions |
| aa_graphSampleSizeSummary | Technique 1: Aleatory Analysis |
| aa_sampleSizeSummary | Technique 1: Aleatory Analysis |
| aa_summariseReplicateRuns | Technique 1: Aleatory Analysis |
| atest | Internal Functions |
| Curve1_chemoLowerLinearAdjust | Utility: Sample Data |
| Curve1_chemoThreshold | Utility: Sample Data |
| Curve1_chemoUpperLinearAdjust | Utility: Sample Data |
| Curve1_Dummy | Utility: Sample Data |
| Curve1_maxVCAMeffectProbabilityCutoff | Utility: Sample Data |
| Curve1_Results_Summary | Utility: Sample Data |
| Curve1_thresholdBindProbability | Utility: Sample Data |
| Curve1_vcamSlope | Utility: Sample Data |
| eFAST_Analysis | Utility: Sample Data |
| efast_cvmethod | Internal Functions |
| efast_generate_medians_for_all_parameter_subsets | eFAST: Perform Analysis of Results |
| efast_generate_sample | eFAST |
| efast_generate_sample_netlogo | Technique 5: SPARTAN and Netlogo |
| efast_get_overall_medians | eFAST: Perform Analysis of Results |
| efast_graph_Results | Internal Functions |
| efast_netlogo_get_overall_medians | Technique 5: SPARTAN and Netlogo |
| efast_netlogo_run_Analysis | Technique 5: SPARTAN and Netlogo |
| efast_parameterdist | Internal Functions |
| efast_process_netlogo_result | Technique 5: SPARTAN and Netlogo |
| efast_run_Analysis | eFAST: Perform Analysis of Results |
| efast_sd | Internal Functions |
| efast_setfreq | Internal Functions |
| efast_ttest | Internal Functions |
| EgSet_LHC_corCoeffs | Utility: Sample Data |
| getMediansSubset | Generate Medians Subset (getMediansSubset) |
| lhc_calculatePRCCForMultipleTimepoints | LHC: Perform Analysis of Results |
| lhc_constructCoEffDataSet | Internal Functions |
| lhc_countSignificantParametersOverTime | LHC: Perform Analysis of Results |
| lhc_generateLHCSummary | LHC: Perform Analysis of Results |
| lhc_generatePRCoEffs | LHC: Perform Analysis of Results |
| lhc_generateTimepointFiles | LHC: Perform Analysis of Results |
| lhc_generate_lhc_sample | LHC |
| lhc_generate_lhc_sample_netlogo | Technique 5: SPARTAN and Netlogo |
| lhc_generate_netlogo_PRCoEffs | Technique 5: SPARTAN and Netlogo |
| lhc_graphMeasuresForParameterChange | LHC: Perform Analysis of Results |
| lhc_graphPRCCForMultipleTimepoints | LHC: Perform Analysis of Results |
| lhc_netlogo_graphMeasuresForParameterChange | Technique 5: SPARTAN and Netlogo |
| LHC_Parameters_for_Runs | Utility: Sample Data |
| lhc_plotCoEfficients | LHC: Perform Analysis of Results |
| lhc_process_netlogo_result | Technique 5: SPARTAN and Netlogo |
| lhc_process_sample_run_subsets | LHC: Perform Analysis of Results |
| LHC_Summary | Utility: Sample Data |
| normaliseATest | Internal Functions |
| num.decimals | Internal Functions |
| oat_countResponsesOfDesiredValue | One-At-A-Time - Perform Analysis of Results |
| oat_csv_result_file_analysis | One-At-A-Time - Perform Analysis of Results |
| OAT_Example_ATests_chemoLowerLinearAdjust | Utility: Sample Data |
| oat_generate_netlogo_behaviour_space_XML | Technique 5: SPARTAN and Netlogo |
| oat_graphATestsForSampleSize | One-At-A-Time - Perform Analysis of Results |
| oat_graph_Leish_ATestsMultipleTimepoints | One-At-A-Time - Perform Analysis of Results |
| OAT_Medians | Utility: Sample Data |
| oat_parameter_sampling | Technique 2: One-At-A-Time - Generate Parameter Value Sets |
| oat_plotResultDistribution | One-At-A-Time - Perform Analysis of Results |
| oat_processParamSubsets | One-At-A-Time - Perform Analysis of Results |
| oat_process_netlogo_result | Technique 5: SPARTAN and Netlogo |
| OAT_Sampling_chemoThreshold_Values | Utility: Sample Data |
| OAT_Sampling_maxVCAMeffectProbabilityCutoff_Values | Utility: Sample Data |
| pcor.mat | Internal Functions |
| pcor.rec | Internal Functions |
| pcor.test | Internal Functions |
| perform_aTest_for_all_sim_measures | Internal Functions |
| plotATestsFromTimepointFiles | One-At-A-Time - Perform Analysis of Results |
| ploteFASTSiFromTimepointFiles | eFAST: Perform Analysis of Results |
| plotPRCCSFromTimepointFiles | LHC: Perform Analysis of Results |
| prepare_parameter_value_list | Internal Functions |
| subset_results_by_param_value_set | Internal Functions |
| table_header_check | Internal Functions |
| testP-internal | Internal Functions |