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| maxchi | Stepwise detection of recombination breakpoints using MaxChi |
| phylpro | Stepwise detection of recombination breakpoints using Phylpro |
| stepwise | Simulated sequence alignment from the stepwise package |
| stepwise.seqs | Simulated sequence alignment from the stepwise package |
| summary.maxchi | Summary of a maxchi object |
| summary.phylpro | Summary of a phylpro object |