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| findGroves | Identify clusters of similar trees |
| linearMrca | Linear MRCA function |
| medTree | Geometric median tree function |
| multiDist | Metric function for 'multiPhylo' input |
| plotGroves | Scatterplot of groups of trees |
| treeDist | Metric function |
| treescape | Phylogenetic tree exploration |
| treescapeServer | Web-based tree explorer |
| treeVec | Tree vector function |
| woodmiceTrees | Bootstrap trees from woodmouse dataset |