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| get.additive.coef.from.2.genoprobs | Compute Additive Coefficient From Two Genotype Probabilities |
| get.additive.coef.from.3.genoprobs | Compute Additive Coefficient From Three Genotype Probabilities |
| get.dom.coef.from.3.genoprobs | Compute Dominance Deviation Coefficient From Three Genotype Probabilities |
| get.genoprobs.by.marker.name | Get Genotype Probabilities From a Cross Object By Marker (or Psuedomarker) Name |
| get.genotypes.by.marker.name | Get Genotypes From a Cross Object By Marker Name |
| get.peaks.from.scanonevar | Get Local Maxima from Scanonevar |
| is.scanonevar | is.scanonevar |
| margin.plot | Plot Phenotype of interest Averaged (Marginalized) Across Specified Markers and Phenotypes |
| plot.scanonevar | plot.scanonevar |
| predictive.plot | Plot Predictive Interval for Categorical Genotype/Phenotype Groups |
| scan.via.dglm | Conduct a Scanonevar Using the DGLM Function |
| scanonevar | Conduct a scanonevar. |
| scanonevar.perm | Conduct Scanonevars on Permuted Genotype Data |
| scanonevar.to.p.values | Convert Scanonevar from LODs to Empirical p-values |
| summary.scanonevar | Summary of Peaks in Scanonevar |
| units | Get units of a scanonevar object |
| validate.convert.scanonevar.to.p.values | Check the Compatibility of the Scanonevar to be Converted with the Permutations to be Used in the Conversion |
| validate.input.scanonevar | Validate the Input before Conducting a Scanonevar |