mlgt-package	mlgt-package
alignReport	alignReport
callGenotypes	callGenotypes
callGenotypes.default	callGenotypes.default
callGenotypes.mlgtResult	callGenotypes
combineMlgtResults	combineMlgtResults
createKnownAlleleList	createKnownAlleleList
dumpVariantMap.mlgtResult	dumpVariantMap.mlgtResult
dumpVariants	dumpVariants
errorCorrect	errorCorrect-methods
errorCorrect,missing,list-method	errorCorrect-methods
errorCorrect,mlgtResult,missing-method	errorCorrect-methods
genotypeCall	genotypeCall
getSubSeqsTable	getSubSeqsTable
getTopBlastHits	getTopBlastHits
inspectBlastResults	inspectBlastResults
mlgt	mlgt-methods
mlgt,mlgtDesign-method	mlgt-methods
mlgt.mlgtDesign	mlgt-methods
mlgtDesign	mlgtDesign
mlgtResult	mlgtResult
my.mlgt.Result	my.mlgt.Result
plotGenotypeEvidence	plotGenotypeEvidence-methods
plotGenotypeEvidence,genotypeCall,missing,character-method	plotGenotypeEvidence-methods
plotGenotypeEvidence,genotypeCall,missing,missing-method	plotGenotypeEvidence-methods
plotGenotypeEvidence,genoytpeCall,missing,character-method	plotGenotypeEvidence-methods
plotGenotypeEvidence,genoytpeCall,missing,missing-method	plotGenotypeEvidence-methods
plotGenotypeEvidence,missing,list,character-method	plotGenotypeEvidence-methods
plotGenotypeEvidence.genotypeCall	plotGenotypeEvidence-methods
plotGenotypeEvidence.genotypeCall.file	plotGenotypeEvidence-methods
plotGenotypeEvidence.list	plotGenotypeEvidence-methods
prepareMlgtRun	prepareMlgtRun-methods
prepareMlgtRun,missing,character,character,character,list,list,list,character,character-method	prepareMlgtRun-methods
prepareMlgtRun,mlgtDesign,missing,missing,missing,missing,missing,missing,missing,character-method	prepareMlgtRun-methods
prepareMlgtRun.listDesign,prepareMlgtRun.mlgtDesign	prepareMlgtRun-methods
printBlastResultGraphs	printBlastResultGraphs
variantMap	variantMap
writeGenotypeCallsToFile	writeGenotypeCallsToFile-methods
writeGenotypeCallsToFile,list,missing-method	writeGenotypeCallsToFile-methods
writeGenotypeCallsToFile,missing,genotypeCall-method	writeGenotypeCallsToFile-methods
writeGenotypeCallsToFile.list,writeGenotypeCallsToFile.genotypeCall	writeGenotypeCallsToFile-methods
