dynamicGraph

Documentation for package ‘dynamicGraph’ version 0.2.2.6

DESCRIPTION file.
Code demos. Use demo() to run them.

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A B C D E F G I L M N O P R S T V W

dynamicGraph-package

dynamicGraph

-- A --

addModel	Class dg.graph
addModel-method	Class dg.graph
addModel-method	Class dg.graphedges
addModel-method	Class dg.simple.graph
addToPopups	Class dg.Vertex
addToPopups-method	Class dg.Node
addView	Class dg.graph
addView-method	Class dg.graph
addView-method	Class dg.graphedges
addView-method	Class dg.simple.graph
ancestors	Class dg.Block
ancestors-method	Class dg.Block
ancestors-method	Class dg.Vertex
ancestors<-	Class dg.Block
ancestors<--method	Class dg.Block
ancestors<--method	Class dg.Vertex
ancestorsBlockList	Class dg.BlockList: The block list
ancestorsBlockList-method	Class dg.BlockList: The block list
asDataFrame	Classes dg.list, dg.NodeList, and dg.EdgeList
asDataFrame-method	Classes dg.list, dg.NodeList, and dg.EdgeList

-- B --

blockEdgeList	Class dg.BlockEdgeList: The block edge list
blockEdgeList-method	Class dg.graphedges
blockEdgeList<--method	Class dg.graphedges
blockindex	Class dg.Vertex
blockindex-method	Class dg.Vertex
blockindex<-	Class dg.Vertex
blockindex<--method	Class dg.Vertex
Blockindices	Classes dg.list, dg.NodeList, and dg.EdgeList
Blockindices-method	Classes dg.list, dg.NodeList, and dg.EdgeList
Blockindices<-	Classes dg.list, dg.NodeList, and dg.EdgeList
blockList	Class dg.BlockList: The block list
blockList-method	Class dg.graphedges
blockList<--method	Class dg.graphedges
blocks	Class DynamicGraph
blocks-method	Class DynamicGraph
blocks<-	Class DynamicGraph
blocks<--method	Class DynamicGraph
blockTreeToList	Extract the list of blocks from a block tree

-- C --

canvas	Class DynamicGraphView
canvas-method	Class DynamicGraphView
checkBlockList	Class dg.BlockList: The block list
checkBlockList-method	Class dg.BlockList: The block list
Children	The block tree
children	Class dg.Block
Children-method	Classes dg.list, dg.NodeList, and dg.EdgeList
children-method	Class dg.Block
Children<-	The block tree
children<-	Class dg.Block
Children<--method	Classes dg.list, dg.NodeList, and dg.EdgeList
children<--method	Class dg.Block
Closed	The block tree
closed	Class dg.Block
Closed-method	Classes dg.list, dg.NodeList, and dg.EdgeList
closed-method	Class dg.Block
Closed<-	The block tree
closed<-	Class dg.Block
Closed<--method	Classes dg.list, dg.NodeList, and dg.EdgeList
closed<--method	Class dg.Block
coerce-method	Class dg.simple.graph
color	Class dg.Vertex
color-method	Class dg.Node
color<-	Class dg.Vertex
color<--method	Class dg.Node
Colors	Classes dg.list, dg.NodeList, and dg.EdgeList
Colors-method	Classes dg.list, dg.NodeList, and dg.EdgeList
Colors<-	Classes dg.list, dg.NodeList, and dg.EdgeList
Colors<--method	Classes dg.list, dg.NodeList, and dg.EdgeList
Constrained	Classes dg.list, dg.NodeList, and dg.EdgeList
constrained	Class dg.Vertex
Constrained-method	Classes dg.list, dg.NodeList, and dg.EdgeList
constrained-method	Class dg.Vertex
Constrained<-	Classes dg.list, dg.NodeList, and dg.EdgeList
constrained<-	Class dg.Vertex
Constrained<--method	Classes dg.list, dg.NodeList, and dg.EdgeList
constrained<--method	Class dg.Vertex
control	Class DynamicGraph
control-method	Class DynamicGraph
control<-	Class DynamicGraph
control<--method	Class DynamicGraph
control<--method	Class DynamicGraphModel
control<--method	Class DynamicGraphView

-- D --

dash	Class dg.VertexEdge
dash-method	Class dg.Edge
dash<-	Class dg.VertexEdge
dash<--method	Class dg.Edge
Dashes	Classes dg.list, dg.NodeList, and dg.EdgeList
Dashes-method	Classes dg.list, dg.NodeList, and dg.EdgeList
Dashes<-	Classes dg.list, dg.NodeList, and dg.EdgeList
Dashes<--method	Classes dg.list, dg.NodeList, and dg.EdgeList
descendants	Class dg.Block
descendants-method	Class dg.Block
descendants-method	Class dg.Vertex
descendants<-	Class dg.Block
descendants<--method	Class dg.Block
descendants<--method	Class dg.Vertex
descendantsBlockList	Class dg.BlockList: The block list
descendantsBlockList-method	Class dg.BlockList: The block list
dg	Class dg.graph
dg-method	Class DynamicGraph
dg-method	Class DynamicGraphView
dg-method	Class dg.graph
dg-method	Class dg.simple.graph
dg.Block	Class dg.Block
dg.Block-class	Class dg.Block
dg.BlockEdge	Class dg.BlockEdge
dg.BlockEdge-class	Class dg.BlockEdge
dg.BlockEdgeList-class	Class dg.BlockEdgeList: The block edge list
dg.BlockList-class	Class dg.BlockList: The block list
dg.ContinuousVertex-class	Classes dg.DiscreteVertex, dg.ContinuousVertex, and dg.OrdinalVertex
dg.control	Options of dynamicGraphMain and simpleGraphtoGraph
dg.DashedEdge	Class dg.VertexEdge
dg.DashedEdge-class	Class dg.VertexEdge
dg.DiscreteGenerator-class	Classes dg.Generator, dg.DiscreteGenerator, dg.Linear\-Generator, and dg.QuadraticGenerator
dg.DiscreteVertex-class	Classes dg.DiscreteVertex, dg.ContinuousVertex, and dg.OrdinalVertex
dg.DottedEdge	Class dg.VertexEdge
dg.DottedEdge-class	Class dg.VertexEdge
dg.DoubleArrowEdge	Class dg.VertexEdge
dg.DoubleArrowEdge-class	Class dg.VertexEdge
dg.DoubleConnectedEdge	Class dg.VertexEdge
dg.DoubleConnectedEdge-class	Class dg.VertexEdge
dg.Edge	Class dg.VertexEdge
dg.Edge-class	Class dg.Edge
dg.EdgeList-class	Classes dg.list, dg.NodeList, and dg.EdgeList
dg.ExtraEdge	Class dg.ExtraEdge
dg.ExtraEdge-class	Class dg.ExtraEdge
dg.ExtraEdgeList-class	Class dg.ExtraEdgeList: The extra edge list
dg.FactorEdge	Class dg.FactorEdge
dg.FactorEdge-class	Class dg.FactorEdge
dg.FactorEdgeList-class	Class dg.FactorEdgeList: The factor edge list
dg.FactorVertex	Class dg.FactorVertex
dg.FactorVertex-class	Class dg.FactorVertex
dg.FactorVertexList-class	Class dg.FactorVertexList: The factor vertex list
dg.Generator-class	Classes dg.Generator, dg.DiscreteGenerator, dg.Linear\-Generator, and dg.QuadraticGenerator
dg.graph-class	Class dg.graph
dg.graphedges-class	Class dg.graphedges
dg.LinearGenerator-class	Classes dg.Generator, dg.DiscreteGenerator, dg.Linear\-Generator, and dg.QuadraticGenerator
dg.list-class	Classes dg.list, dg.NodeList, and dg.EdgeList
dg.Model-class	Class dg.Model
dg.Node	Class dg.Vertex
dg.Node-class	Class dg.Node
dg.NodeList-class	Classes dg.list, dg.NodeList, and dg.EdgeList
dg.OrdinalVertex-class	Classes dg.DiscreteVertex, dg.ContinuousVertex, and dg.OrdinalVertex
dg.QuadraticGenerator-class	Classes dg.Generator, dg.DiscreteGenerator, dg.Linear\-Generator, and dg.QuadraticGenerator
dg.simple.graph-class	Class dg.simple.graph
dg.Test-class	Class dg.Test
dg.TextVertex-class	Class dg.TextVertex
dg.TripleConnectedEdge	Class dg.VertexEdge
dg.TripleConnectedEdge-class	Class dg.VertexEdge
dg.Vertex	Class dg.Vertex
dg.Vertex-class	Class dg.Vertex
dg.VertexEdge	Class dg.VertexEdge
dg.VertexEdge-class	Class dg.VertexEdge
dg.VertexEdgeList-class	Class dg.VertexEdgeList: The edge list
dg.VertexList-class	Class dg.VertexList: The vertex list
dg<-	Class DynamicGraphView
dg<--method	Class DynamicGraphView
draw	Class dg.Vertex
draw-method	Class dg.Block
draw-method	Classes dg.DiscreteVertex, dg.ContinuousVertex, and dg.OrdinalVertex
draw-method	Class dg.Edge
draw-method	Classes dg.Generator, dg.DiscreteGenerator, dg.Linear\-Generator, and dg.QuadraticGenerator
draw-method	Class dg.TextVertex
drawModel	DEPRECATED: Draw the dynamicGraph window and slaves
DynamicGraph	DEPRECATED: Simple interface to dynamicGraph
dynamicGraph	Dynamic Graph
DynamicGraph-class	Class DynamicGraph
dynamicGraphMain	Dynamic Graph
DynamicGraphModel-class	Class DynamicGraphModel
DynamicGraphView-class	Class DynamicGraphView

-- E --

edgeClasses	Valid edge classes
edgeList	Class dg.graph
edgeList-method	Class dg.graphedges
edgeList<--method	Class dg.graphedges
EssentialDynamicGraphView-class	Class DynamicGraphView
extraEdgeList	Class dg.ExtraEdgeList: The extra edge list
extraEdgeList-method	Class dg.graphedges
extraEdgeList<--method	Class dg.graphedges
extraList	Class dg.graph
extraList-method	Class dg.graphedges
extraList<--method	Class dg.graphedges

-- F --

factorClasses	Valid factor vertex classes
FactorDynamicGraphView-class	Class DynamicGraphView
factorEdgeList	Class dg.FactorEdgeList: The factor edge list
factorEdgeList-method	Class dg.graphedges
factorEdgeList<--method	Class dg.graphedges
factorVertexList	Class dg.FactorVertexList: The factor vertex list
factorVertexList-method	Class dg.graphedges
factorVertexList<--method	Class dg.graphedges
fixed.positions-method	Class dg.FactorVertex
fixed.positions<--method	Class dg.FactorVertex
FixedPositions-method	Classes dg.list, dg.NodeList, and dg.EdgeList
FixedPositions<--method	Classes dg.list, dg.NodeList, and dg.EdgeList

-- G --

graphComponents	Class dg.Model
graphComponents-method	Class dg.Model
graphEdges	Class dg.Model
graphEdges-method	Class dg.Model
graphs	Class DynamicGraphModel
graphs-method	Class DynamicGraphModel
graphs<-	Class DynamicGraphModel
graphs<--method	Class DynamicGraphModel

-- I --

index	Class dg.Vertex
index-method	Class DynamicGraphModel
index-method	Class DynamicGraphView
index-method	Class dg.Block
index-method	Class dg.FactorVertex
index-method	Class dg.Vertex
index<-	Class dg.Vertex
index<--method	Class dg.Block
index<--method	Class dg.FactorVertex
index<--method	Class dg.Vertex
Indices	Classes dg.list, dg.NodeList, and dg.EdgeList
Indices-method	Classes dg.list, dg.NodeList, and dg.EdgeList
initialize-method	Class dg.Block
initialize-method	Class dg.Edge
initialize-method	Class dg.FactorVertex
initialize-method	Class dg.Model
initialize-method	Class dg.Test
initialize-method	Class dg.Vertex
initialize-method	Class dg.BlockEdgeList: The block edge list
initialize-method	Class dg.VertexEdgeList: The edge list
initialize-method	Class dg.ExtraEdgeList: The extra edge list
initialize-method	Class dg.FactorEdgeList: The factor edge list
initialize-method	Class dg.VertexList: The vertex list

-- L --

label	Class DynamicGraph
label-method	Class DynamicGraph
label-method	Class DynamicGraphModel
label-method	Class DynamicGraphView
label-method	Class dg.Edge
label-method	Class dg.Node
label-method	Class dg.Test
label<-	Class DynamicGraph
label<--method	Class DynamicGraph
label<--method	Class DynamicGraphModel
label<--method	Class DynamicGraphView
label<--method	Class dg.Edge
label<--method	Class dg.Node
labelPosition	Class dg.Vertex
labelPosition-method	Class dg.Node
labelPosition<-	Class dg.Vertex
labelPosition<--method	Class dg.Node
LabelPositions	Classes dg.list, dg.NodeList, and dg.EdgeList
LabelPositions-method	Classes dg.list, dg.NodeList, and dg.EdgeList
LabelPositions<-	Classes dg.list, dg.NodeList, and dg.EdgeList
LabelPositions<--method	Classes dg.list, dg.NodeList, and dg.EdgeList
Labels	Classes dg.list, dg.NodeList, and dg.EdgeList
Labels-method	Classes dg.list, dg.NodeList, and dg.EdgeList
Labels<-	Classes dg.list, dg.NodeList, and dg.EdgeList
Labels<--method	Classes dg.list, dg.NodeList, and dg.EdgeList

-- M --

menu	DEPRECATED: Draw the dynamicGraph window and slaves
modalDialog	Modal dialog window for returning a text string
model	Class DynamicGraphModel
model-method	Class DynamicGraphModel
model<-	Class DynamicGraphModel
model<--method	Class DynamicGraphModel
models	Class DynamicGraph
models-method	Class DynamicGraph
models<-	Class DynamicGraph
models<--method	Class DynamicGraph
modifyModel	Class dg.Model
modifyModel-method	Class dg.Model
MoralDynamicGraphView-class	Class DynamicGraphView

-- N --

name	Class dg.Vertex
name-method	Class dg.Block
name-method	Class dg.Edge
name-method	Class dg.Vertex
name<-	Class dg.Vertex
name<--method	Class dg.Vertex
Names	Classes dg.list, dg.NodeList, and dg.EdgeList
Names-method	Classes dg.list, dg.NodeList, and dg.EdgeList
Names<-	Classes dg.list, dg.NodeList, and dg.EdgeList
Names<--method	Classes dg.list, dg.NodeList, and dg.EdgeList
nameToVertexIndex	The indices of vertices
newBlock	Class dg.Block
newBlockEdge	Class dg.BlockEdge
newDefaultModelObject	Class dg.Model
newDefaultTestObject	Class dg.Test
newExtraEdge	Class dg.ExtraEdge
newFactor	Class dg.FactorVertex
newFactorEdge	Class dg.FactorEdge
newVertex	Class dg.Vertex
newVertexEdge	Class dg.VertexEdge
NodeAncestors	The block tree
NodeAncestors-method	Classes dg.list, dg.NodeList, and dg.EdgeList
NodeAncestors<-	The block tree
NodeAncestors<--method	Classes dg.list, dg.NodeList, and dg.EdgeList
NodeDescendants	The block tree
NodeDescendants-method	Classes dg.list, dg.NodeList, and dg.EdgeList
NodeDescendants<-	The block tree
NodeDescendants<--method	Classes dg.list, dg.NodeList, and dg.EdgeList
NodeIndices	Classes dg.list, dg.NodeList, and dg.EdgeList
nodeIndices	Class dg.FactorVertex
NodeIndices-method	Classes dg.list, dg.NodeList, and dg.EdgeList
nodeIndices-method	Class dg.Edge
nodeIndices-method	Class dg.FactorVertex
nodeIndices<-	Class dg.FactorVertex
nodeIndices<--method	Class dg.FactorVertex
nodeIndicesOfEdge	Class dg.VertexEdge
nodeIndicesOfEdge-method	Class dg.Edge
nodeIndicesOfEdge<-	Class dg.VertexEdge
nodeIndicesOfEdge<--method	Class dg.Edge
NodeTypes	Classes dg.list, dg.NodeList, and dg.EdgeList
NodeTypes-method	Classes dg.list, dg.NodeList, and dg.EdgeList
nodeTypesOfEdge	Class dg.VertexEdge
nodeTypesOfEdge-method	Class dg.BlockEdge
nodeTypesOfEdge-method	Class dg.ExtraEdge
nodeTypesOfEdge-method	Class dg.FactorEdge
nodeTypesOfEdge-method	Class dg.VertexEdge

-- O --

Oriented	Classes dg.list, dg.NodeList, and dg.EdgeList
oriented	Class dg.VertexEdge
Oriented-method	Classes dg.list, dg.NodeList, and dg.EdgeList
oriented-method	Class dg.BlockEdge
oriented-method	Class dg.VertexEdge
oriented-method	Class dg.graphedges
Oriented<-	Classes dg.list, dg.NodeList, and dg.EdgeList
oriented<-	Class dg.VertexEdge
Oriented<--method	Classes dg.list, dg.NodeList, and dg.EdgeList
oriented<--method	Class dg.BlockEdge
oriented<--method	Class dg.VertexEdge

-- P --

parent	Class dg.Block
parent-method	Class dg.Block
parent<-	Class dg.Block
parent<--method	Class dg.Block
Parents	The block tree
Parents-method	Classes dg.list, dg.NodeList, and dg.EdgeList
Parents<-	The block tree
Parents<--method	Classes dg.list, dg.NodeList, and dg.EdgeList
position	Class dg.Vertex
position-method	Class dg.Block
position-method	Class dg.Vertex
position<-	Class dg.Vertex
position<--method	Class dg.Block
position<--method	Class dg.Vertex
Positions	Classes dg.list, dg.NodeList, and dg.EdgeList
Positions-method	Classes dg.list, dg.NodeList, and dg.EdgeList
Positions<-	Classes dg.list, dg.NodeList, and dg.EdgeList
Positions<--method	Classes dg.list, dg.NodeList, and dg.EdgeList
propertyDialog	Class dg.Vertex
propertyDialog-method	Class dg.Node

-- R --

redrawGraphWindow	DEPRECATED: Draw the dynamicGraph window and slaves
redrawView	DEPRECATED: Draw the dynamicGraph window and slaves
replaceBlockList	Replace the block list of model frame
replaceControls	Replace the controls of model frame
replaceModel	Class dg.graph
replaceModel-method	Class dg.graph
replaceModel-method	Class dg.graphedges
replaceModel-method	Class dg.simple.graph
replaceVertexList	Replace the vertex list of model frame
replaceView	Class dg.graph
replaceView-method	Class dg.graph
replaceView-method	Class dg.graphedges
replaceView-method	Class dg.simple.graph
returnBlockEdgeList	Class dg.BlockEdgeList: The block edge list
returnEdgeList	Class dg.VertexEdgeList: The edge list
returnExtraEdgeList	Class dg.ExtraEdgeList: The extra edge list
returnFactorEdgeList	Class dg.FactorEdgeList: The factor edge list
returnFactorVerticesAndEdges	Class dg.FactorVertexList: The factor vertex list
returnGraphComponents	Class dg.Model
returnGraphComponents-method	Class dg.Model
returnVertexList	Class dg.VertexList: The vertex list

-- S --

selectDialog	Dialog window for selection between items
setBlocks	Class dg.BlockList: The block list
setGraphComponents	Class dg.Model
setGraphComponents-method	Class dg.Model
setGraphEdges	Class dg.Model
setGraphEdges-method	Class dg.Model
setSlots	Class dg.Node
setSlots-method	Class dg.Model
setSlots-method	Class dg.Node
setSlots-method	Class dg.Test
setTreeBlocks	The block tree
show-method	Class DynamicGraph
show-method	Class DynamicGraphModel
show-method	Class DynamicGraphView
show-method	Class dg.graphedges
show-method	Classes dg.list, dg.NodeList, and dg.EdgeList
SimpleDynamicGraphView-class	Class DynamicGraphView
simpleGraphToGraph	simple graph to graph
Str	Class DynamicGraph
Str-method	Class DynamicGraph
Str-method	Class DynamicGraphModel
Str-method	Class DynamicGraphView
Str-method	Class dg.Model
Str-method	Class dg.graphedges
Str-method	Classes dg.list, dg.NodeList, and dg.EdgeList
Strata	Classes dg.list, dg.NodeList, and dg.EdgeList
Strata-method	Classes dg.list, dg.NodeList, and dg.EdgeList
Strata<-	Classes dg.list, dg.NodeList, and dg.EdgeList
Strata<--method	Classes dg.list, dg.NodeList, and dg.EdgeList
stratum	Class dg.Vertex
stratum-method	Class dg.Block
stratum-method	Class dg.Vertex
stratum<-	Class dg.Vertex
stratum<--method	Class dg.Block
stratum<--method	Class dg.Vertex

-- T --

tags	Class DynamicGraphView
tags-method	Class DynamicGraphView
testEdge	Class dg.Model
testEdge-method	Class dg.Model
top	Class DynamicGraphView
top-method	Class DynamicGraphView

-- V --

validEdgeClasses	Valid edge classes
validFactorClasses	Valid factor vertex classes
validVertexClasses	Valid vertex classes
validViewClasses	Valid view classes
vbox	Class DynamicGraphView
vbox-method	Class DynamicGraphView
vertexClasses	Valid vertex classes
vertexEdgeList	Class dg.VertexEdgeList: The edge list
vertexList	Class dg.VertexList: The vertex list
vertices	Class DynamicGraph
vertices-method	Class DynamicGraph
vertices<-	Class DynamicGraph
vertices<--method	Class DynamicGraph
viewClasses	Valid view classes
viewLabel	Class DynamicGraphView
viewLabel-method	Class DynamicGraphView
viewType	Class dg.graph
viewType-method	Class dg.graphedges
viewType<--method	Class dg.graphedges
Visible	Classes dg.list, dg.NodeList, and dg.EdgeList
visible	Class dg.Vertex
Visible-method	Classes dg.list, dg.NodeList, and dg.EdgeList
visible-method	Class dg.Block
visible-method	Class dg.Vertex
Visible<-	Classes dg.list, dg.NodeList, and dg.EdgeList
visible<-	Class dg.Vertex
Visible<--method	Classes dg.list, dg.NodeList, and dg.EdgeList
visible<--method	Class dg.Block
visible<--method	Class dg.Vertex
visibleBlocks	Class dg.graph
visibleBlocks-method	Class dg.graphedges
visibleBlocks<--method	Class dg.graphedges
visibleVertices	Class dg.graph
visibleVertices-method	Class dg.graphedges
visibleVertices<--method	Class dg.graphedges

-- W --

wDG	DEPRECATED: Interface to dynamicGraph
width	Class dg.VertexEdge
width-method	Class dg.Edge
width-method	Class dg.Test
width<-	Class dg.VertexEdge
width<--method	Class dg.Edge
Widths	Classes dg.list, dg.NodeList, and dg.EdgeList
Widths-method	Classes dg.list, dg.NodeList, and dg.EdgeList
Widths<-	Classes dg.list, dg.NodeList, and dg.EdgeList
Widths<--method	Classes dg.list, dg.NodeList, and dg.EdgeList