Entry: 01.Introduction
Aliases: 01.Introduction popbio
Keywords: documentation
Description: Introduction to the popbio Package
URL: ../../../library/popbio/html/01Introduction.html

Entry: 02.Caswell
Aliases: 02.Caswell Caswell
Keywords: documentation
Description: Converted Matlab functions from Caswell (2001)
URL: ../../../library/popbio/html/02Caswell.html

Entry: 03.Morris
Aliases: 03.Morris Morris
Keywords: documentation
Description: Converted Matlab functions from Morris and Doak(2002)
URL: ../../../library/popbio/html/03Morris.html

Entry: Kendall
Aliases: Kendall
Keywords: survey
Description: Find the best Kendall's estimates of mean and environmental variance for beta-binomial vital rates.
URL: ../../../library/popbio/html/Kendall.html

Entry: QPmat
Aliases: QPmat
Keywords: survey
Description: Build a projection matrix from a time series of individuals (or densities) per stage.
URL: ../../../library/popbio/html/QPmat.html

Entry: aq.census
Aliases: aq.census
Keywords: datasets
Description: Annual census data for Aquilegia in the southwestern US
URL: ../../../library/popbio/html/aq.census.html

Entry: aq.matrix
Aliases: aq.matrix
Keywords: survey
Description: Create a projection matrix for Aquilegia
URL: ../../../library/popbio/html/aq.matrix.html

Entry: aq.trans
Aliases: aq.trans
Keywords: datasets
Description: Annual transition data for Aquilegia in the southwestern US
URL: ../../../library/popbio/html/aq.trans.html

Entry: betaval
Aliases: betaval
Keywords: survey
Description: Generate beta-distributed random numbers
URL: ../../../library/popbio/html/betaval.html

Entry: boot.transitions
Aliases: boot.transitions
Keywords: survey
Description: Bootstrap observed census transitions
URL: ../../../library/popbio/html/boot.transitions.html

Entry: countCDFxt
Aliases: countCDFxt
Keywords: survey
Description: Calculate count-based extinction probabilities and bootstrap confidence intervals
URL: ../../../library/popbio/html/countCDFxt.html

Entry: eigen.analysis
Aliases: eigen.analysis
Keywords: survey
Description: Eigenvalue and eigenvector analysis of a projection matrix
URL: ../../../library/popbio/html/eigen.analysis.html

Entry: fundamental.matrix
Aliases: fundamental.matrix
Keywords: survey
Description: Fundamental matrix and age-specific survival
URL: ../../../library/popbio/html/fundamental.matrix.html

Entry: generation.time
Aliases: generation.time
Keywords: survey
Description: Generation time
URL: ../../../library/popbio/html/generation.time.html

Entry: head2
Aliases: head2
Keywords: manip
Description: Return the first and last part of a matrix or dataframe
URL: ../../../library/popbio/html/head2.html

Entry: hudcorrs
Aliases: hudcorrs
Keywords: datasets
Description: Correlation matrices for Hudsonia vital rates
URL: ../../../library/popbio/html/hudcorrs.html

Entry: hudmxdef
Aliases: hudmxdef
Keywords: survey
Description: Matrix definition program for Hudsonia vital rates
URL: ../../../library/popbio/html/hudmxdef.html

Entry: hudsonia
Aliases: hudsonia
Keywords: datasets
Description: Projection matrices for mountain golden heather
URL: ../../../library/popbio/html/hudsonia.html

Entry: hudvrs
Aliases: hudvrs
Keywords: datasets
Description: Best Kendall estimates of Hudsonia vital rate means and variances
URL: ../../../library/popbio/html/hudvrs.html

Entry: lnorms
Aliases: lnorms
Keywords: survey
Description: Generate random lognormal values for fertility rates
URL: ../../../library/popbio/html/lnorms.html

Entry: logi.hist.plot
Aliases: logi.hist.plot
Keywords: survey
Description: Plot logistic regression
URL: ../../../library/popbio/html/logi.hist.plot.html

Entry: monkeyflower
Aliases: monkeyflower
Keywords: datasets
Description: Projection matrices for monkeyflower
URL: ../../../library/popbio/html/monkeyflower.html

Entry: multiresultm
Aliases: multiresultm
Keywords: survey
Description: Incorporate demographic stochasticity into population projections
URL: ../../../library/popbio/html/multiresultm.html

Entry: nematode
Aliases: nematode
Keywords: datasets
Description: Population densities for the sugarbeet cyst nematode
URL: ../../../library/popbio/html/nematode.html

Entry: net.reproductive.rate
Aliases: net.reproductive.rate
Keywords: survey
Description: Net reproductive rate
URL: ../../../library/popbio/html/net.reproductive.rate.html

Entry: pfister.plot
Aliases: pfister.plot
Keywords: survey
Description: Create log-log plots of variance vs. sensitivity and CV vs. elasticity
URL: ../../../library/popbio/html/pfister.plot.html

Entry: pop.projection
Aliases: pop.projection
Keywords: survey
Description: Calculate population growth rates by projection
URL: ../../../library/popbio/html/pop.projection.html

Entry: projection.matrix
Aliases: projection.matrix
Keywords: survey
Description: Construct projection matrix models using transition frequency tables
URL: ../../../library/popbio/html/projection.matrix.html

Entry: stage.vector.plot
Aliases: stage.vector.plot
Keywords: survey
Description: Plot stage vector projections
URL: ../../../library/popbio/html/stage.vector.plot.html

Entry: stoch.growth.rate
Aliases: stoch.growth.rate
Keywords: survey
Description: Calculate log stochastic growth rate
URL: ../../../library/popbio/html/stoch.growth.rate.html

Entry: stoch.projection
Aliases: stoch.projection
Keywords: survey
Description: Simulate stochastic growth from a sequence of matrices
URL: ../../../library/popbio/html/stoch.projection.html

Entry: stoch.quasi.ext
Aliases: stoch.quasi.ext
Keywords: survey
Description: Calculate quasi-extinction threshold
URL: ../../../library/popbio/html/stoch.quasi.ext.html

Entry: stretchbetaval
Aliases: stretchbetaval
Keywords: survey
Description: Generate stretched beta-distributed random numbers
URL: ../../../library/popbio/html/stretchbetaval.html

Entry: teasel
Aliases: teasel
Keywords: datasets
Description: T and F matrix for teasel
URL: ../../../library/popbio/html/teasel.html

Entry: test.census
Aliases: test.census
Keywords: datasets
Description: Census data for hypothetical plant
URL: ../../../library/popbio/html/test.census.html

Entry: tortoise
Aliases: tortoise
Keywords: datasets
Description: T and F matrices for desert tortoise
URL: ../../../library/popbio/html/tortoise.html

Entry: varEst
Aliases: varEst
Keywords: survey
Description: Estimate the variance of beta-binomial vital rates using approximation method of Akcakaya
URL: ../../../library/popbio/html/varEst.html

Entry: vitalsim
Aliases: vitalsim
Keywords: survey
Description: Calculate stochastic growth rate and extinction time CDF using vital rates with within-year, auto-, and cross-correlations
URL: ../../../library/popbio/html/vitalsim.html

Entry: whale
Aliases: whale
Keywords: datasets
Description: T and F matrix for killer whale
URL: ../../../library/popbio/html/whale.html

Entry: woodpecker
Aliases: woodpecker
Keywords: datasets
Description: Survirvorship data for adult and juvenile Acorn Woodpeckers
URL: ../../../library/popbio/html/woodpecker.html
