Entry: qb.BayesFactor
Aliases: qb.BayesFactor plot.qb.BayesFactor print.qb.BayesFactor summary.qb.BayesFactor
Keywords: models
Description: Bayesian model selection via Bayes factors.
URL: ../../../library/qtlbim/html/BayesFactor.html

Entry: Bnapus
Aliases: Bnapus
Keywords: datasets
Description: Cross structure for complete Brassica napus data
URL: ../../../library/qtlbim/html/Bnapus.html

Entry: qb.arch
Aliases: qb.arch summary.qb.arch print.qb.arch qb.arch.default qb.arch.step.fitqtl
Keywords: utilities
Description: Build genetic architecture with chromosomes, positions and epistatic pairs.
URL: ../../../library/qtlbim/html/arch.html

Entry: qb.coda
Aliases: qb.coda
Keywords: manip
Description: Coerce to an MCMC object for use with the coda package.
URL: ../../../library/qtlbim/html/coda.html

Entry: qb.confound
Aliases: qb.confound plot.qb.confound print.qb.confound summary.qb.confound
Keywords: hplot
Description: Examine confounding of covariate with pseudomarkers.
URL: ../../../library/qtlbim/html/confound.html

Entry: qb.covar
Aliases: qb.covar summary.qb.covar print.qb.covar plot.qb.covar
Keywords: hplot
Description: Examine GxE effect of covariates on main genetic effects.
URL: ../../../library/qtlbim/html/covar.html

Entry: qb.data
Aliases: qb.data
Keywords: data
Description: Prepares data for qb.mcmc
URL: ../../../library/qtlbim/html/data.html

Entry: plot.qb.diag
Aliases: qb.diag plot.qb.diag print.qb.diag summary.qb.diag
Keywords: models
Description: Marginal and model-conditional summaries of Bayesian interval mapping diagnostics
URL: ../../../library/qtlbim/html/diag.html

Entry: plot.qb.epistasis
Aliases: qb.epistasis qb.intcov plot.qb.epistasis print.qb.epistasis summary.qb.epistasis
Keywords: hplot models
Description: Density Plots for Models Showing Epistasis and GxE Interactions.
URL: ../../../library/qtlbim/html/epistasis.html

Entry: fisch
Aliases: fisch
Keywords: datasets
Description: Eight QTL Stephens and Fisch simulated data
URL: ../../../library/qtlbim/html/fisch.html

Entry: step.fitqtl
Aliases: step.fitqtl anova.step.fitqtl
Keywords: models
Description: Stepwise backward elimination and anova comparison.
URL: ../../../library/qtlbim/html/fitqtl.html

Entry: qb.genoprob
Aliases: qb.genoprob
Keywords: models
Description: Grid point and genotype probability computation method
URL: ../../../library/qtlbim/html/genoprob.html

Entry: qb.hpdone
Aliases: qb.hpdone summary.qb.hpdone print.qb.hpdone plot.qb.hpdone
Keywords: hplot
Description: Highest probability density (HPD) region.
URL: ../../../library/qtlbim/html/hpd.html

Entry: plot.qb.loci
Aliases: qb.loci plot.qb.loci print.qb.loci summary.qb.loci
Keywords: models
Description: Jittered plot of Bayesian QTL loci samples by chromosome
URL: ../../../library/qtlbim/html/loci.html

Entry: qb.mcmc
Aliases: qb.mcmc
Keywords: models regression
Description: Bayesian Mutiple Interacting QTL mapping using MCMC
URL: ../../../library/qtlbim/html/mcmc.html

Entry: qb.meancomp
Aliases: qb.meancomp summary.qb.meancomp print.qb.meancomp plot.qb.meancomp
Keywords: hplot
Description: Examine grand mean and covariate MCMC samples.
URL: ../../../library/qtlbim/html/meancomp.html

Entry: qb.model
Aliases: qb.model
Keywords: models
Description: Set up interacting QTL model for qb.mcmc
URL: ../../../library/qtlbim/html/model.html

Entry: plot.qb.multloci
Aliases: qb.multloci plot.qb.multloci print.qb.multloci summary.qb.multloci
Keywords: models
Description: Summaries of multiple loci on a chromosome.
URL: ../../../library/qtlbim/html/multloci.html

Entry: plot.qb.pairloci
Aliases: qb.pairloci plot.qb.pairloci print.qb.pairloci summary.qb.pairloci
Keywords: models
Description: Summaries of epistatic pairs of loci.
URL: ../../../library/qtlbim/html/pairloci.html

Entry: plot.qb
Aliases: plot.qb print.qb summary.qb
Keywords: hplot models
Description: Diagnostics plots for Bayesian interval mapping
URL: ../../../library/qtlbim/html/plot.html

Entry: plot.qb.scanone
Aliases: plot.qb.scanone print.qb.scanone print.summary.qb.scanone
Keywords: models hplot
Description: Plot or print qb.scanone object.
URL: ../../../library/qtlbim/html/plot.scanone.html

Entry: plot.qb.scantwo
Aliases: plot.qb.scantwo print.qb.scantwo print.summary.qb.scantwo
Keywords: models hplot
Description: Two dimensional LOD Plot of Epistasis/joint
URL: ../../../library/qtlbim/html/plot.scantwo.html

Entry: qb.get
Aliases: covar.mean pull.grid qb.get qb.cross qb.demo qb.load qb.save qb.reorder
Keywords: utilities
Description: Internal qtlbim routines
URL: ../../../library/qtlbim/html/qb-internal.html

Entry: qb.remove
Aliases: qb.remove qb.recover
Keywords: utilities
Description: Remove or recover qb object and associated MCMC samples
URL: ../../../library/qtlbim/html/remove.html

Entry: qb.scanone
Aliases: qb.scanone
Keywords: models hplot
Description: Genome Scan for Main Loci Involved in Phenotypic Trait
URL: ../../../library/qtlbim/html/scanone.html

Entry: qb.scantwo
Aliases: qb.scantwo
Keywords: models hplot
Description: Genome Scan for Pairs of Loci Involved in Phenotypic Trait
URL: ../../../library/qtlbim/html/scantwo.html

Entry: qb.sim.cross
Aliases: sim.data qb.sim.cross summary.qb.sim
Keywords: datagen
Description: Simulates QTL related data for an F2 or BC cross.
URL: ../../../library/qtlbim/html/sim.html

Entry: qb.sliceone
Aliases: qb.sliceone print.qb.sliceone summary.qb.sliceone plot.qb.sliceone
Keywords: models hplot
Description: Genome Slice to detect QTL for Phenotypic Trait
URL: ../../../library/qtlbim/html/sliceone.html

Entry: qb.slicetwo
Aliases: qb.slicetwo summary.qb.slicetwo plot.qb.slicetwo print.qb.slicetwo
Keywords: hplot
Description: Slices for epistatic pairs.
URL: ../../../library/qtlbim/html/slicetwo.html

Entry: subset.qb
Aliases: subset.qb
Keywords: utilities
Description: Subsetting Bayesian interval mapping data
URL: ../../../library/qtlbim/html/subset.html

Entry: summary.qb.scanone
Aliases: summary.qb.scanone summary.qb.scantwo
Keywords: utilities
Description: Summary of qb.scanone or qb.scantwo object.
URL: ../../../library/qtlbim/html/summary.scanone.html

Entry: qb.sweave
Aliases: qb.sweave
Keywords: hplot
Description: Run sweave to automate QTL search with MCMC samples.
URL: ../../../library/qtlbim/html/sweave.html

Entry: qb.varcomp
Aliases: qb.varcomp summary.qb.varcomp print.qb.varcomp plot.qb.varcomp
Keywords: hplot
Description: Variance components for Bayesian multiple QTL
URL: ../../../library/qtlbim/html/varcomp.html

Entry: vern
Aliases: vern
Keywords: datasets
Description: Eight week vernalization data for Brassica napus
URL: ../../../library/qtlbim/html/vern.html
