plot.qb.multloci           package:qtlbim           R Documentation

_S_u_m_m_a_r_i_e_s _o_f _m_u_l_t_i_p_l_e _l_o_c_i _o_n _a _c_h_r_o_m_o_s_o_m_e.

_D_e_s_c_r_i_p_t_i_o_n:

     Summaries and detailed scatterplot showing all loci found in MCMC
     samples for a chromosome.

_U_s_a_g_e:

     qb.multloci(qbObject, chr)
     ## S3 method for class 'qb.multloci':
     plot(x, amount = 0.75, cex, ... )
     ## S3 method for class 'qb.multloci':
     print(x, ... )
     ## S3 method for class 'qb.multloci':
     summary(object, ... )

_A_r_g_u_m_e_n_t_s:

qbObject: Object of class 'qb'.

  object: Object of class 'qb.multloci'.

       x: Object of class 'qb.multloci'.

     chr: Identifier for one chromosome.

  amount: Amount to 'jitter' points.

     cex: Character expansion of plot symbols.

     ...: Parameters to methods.

_D_e_t_a_i_l_s:

     Find multiple loci in MCMC samples for chromosome 'chr'. Produce
     scatter plot, density plots and histogram of counts with generic
     'plot' or show numerical 'summary'. The plot provides position
     detail complementary to 'plot.qb.scantwo'.

_A_u_t_h_o_r(_s):

     Brian S. Yandell, yandell@stat.wisc.edu

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.qtlbim.org>

_S_e_e _A_l_s_o:

     'plot.qb', 'qb.scantwo'

_E_x_a_m_p_l_e_s:

     temp <- qb.multloci(qbExample, 1)
     summary(temp)
     plot(temp)

