plot.qb                package:qtlbim                R Documentation

_D_i_a_g_n_o_s_t_i_c_s _p_l_o_t_s _f_o_r _B_a_y_e_s_i_a_n _i_n_t_e_r_v_a_l _m_a_p_p_i_n_g

_D_e_s_c_r_i_p_t_i_o_n:

     Diagnostic plots highlight putative QTL loci and effects as well
     as providing graphical model assessment tools.

_U_s_a_g_e:

     ## S3 method for class 'qb':
     plot(x, ask = dev.interactive(), verbose = TRUE, ...)
     ## S3 method for class 'qb':
     print(x, ...)
     ## S3 method for class 'qb':
     summary(object, cutoff = 1, ...)

_A_r_g_u_m_e_n_t_s:

       x: An object of class 'qb'.

  object: An object of class 'qb'.

 verbose: Verbose summaries if 'TRUE'.

     ask: Ask before each plot if 'TRUE'.

  cutoff: Cutoff passed to 'qb.BayesFactor'.

     ...: graphical parameters can be given as arguments to 'plot'

_D_e_t_a_i_l_s:

     This generic 'plot' routine takes an object of class 'qb' created
     by 'qb.mcmc' and produces plots via calls to several other plot
     routines. The generic 'summary' produces a summary, while the
     generic 'print' passes through to 'summary'.

_A_u_t_h_o_r(_s):

     Brian S. Yandell, yandell@stat.wisc.edu

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.qtlbim.org>

_S_e_e _A_l_s_o:

     'plot', 'print', 'summary', 'qb.mcmc', 'qb.coda', 'qb.loci',
     'qb.BayesFactor', 'qb.hpdone', 'qb.epistasis', 'qb.diag'

_E_x_a_m_p_l_e_s:

     plot(qbExample)
     summary(qbExample)

