FunctSNP - SNP annotation data methods and species specific database builder

Documentation for package ‘FunctSNP’ version 1.0-2

FunctSNP-package	FunctSNP - SNP annotation data methods and species-specific database builder
addSpecies	Adds a new species to the list of species recognized by FunctSNP
downloadDB	Download pre-assembled species-specific databases
FunctSNP	FunctSNP - SNP annotation data methods and species-specific database builder
getGeneID	Extract gene ID information using SNP IDs or SNP locations
getGenes	Extract gene information using SNP IDs or Gene IDs
getGenesByDist	Extract gene ID within a specified distance from a SNP
getGO	Extract gene ontology using SNP IDs or Gene IDs
getHighScoreSNP	Extract highest scoring SNP using SNP IDs or SNP locations
getHomolo	Extract homologous genes using SNP IDs or Gene IDs
getKEGG	Extract pathway names using SNP IDs or Gene IDs
getNearGenes	Find nearest genes to either SNP IDs or SNP locations
getOMIA	Extract OMIA using SNP IDs or Gene IDs
getProteins	Extract protein information using SNP IDs or Gene IDs
getSNPID	Extract SNP ID using Gene IDs or SNP locations
getSNPs	Extract SNP information using SNP IDs or Gene IDs
getTraits	Extract traits associated with QTL regions using SNP IDs or Gene IDs
installedDBs	Displays the local available databases
makeDB	Build a species-specific database from external sources
setSpecies	Sets the default species
supportedSpecies	Displays the supported species
userAddedSpecies	Displays the species added by user