Tests/Searches for significant clusters in genetic data.

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Documentation for package ‘bayesclust’ version 3.0

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bayesclust-package Testing and Searching for Clusters in A Hierarchical Bayes Model
bayesclust Testing and Searching for Clusters in A Hierarchical Bayes Model
cluster.optimal Search for Optimal Clustering of Dataset
cluster.test Compute Posterior Probabilities for Dataset
combine Combine posterior probabilities of null hypothesis under several tests
cutoffs Table of Cut-Off Points
egDataset1 Example dataset used in reference paper.
emp2pval Convert Empirical Posterior Probability to P-value
emp2pval.cluster.test Convert Empirical Posterior Probability to P-value
emp2pval.cluster.test.reps Convert Empirical Posterior Probability to P-value
hist.nulldensity Plot Histogram of Null Density
nulldensity Generate Null Distribution of Empirical Posterior Probability
plot.cluster.optimal Plot the Optimal Clusters Found in Datasets
plot.cluster.test Plot Running Posterior Probabilities to Monitor Convergence
plot.cluster.test.reps Plot Running Posterior Probabilities to Monitor Convergence
print.emp2pval Convert Empirical Posterior Probability to P-value
print.summary.cluster.test Provides Summary of Cluster Test Result
print.summary.cluster.test.reps Provides Summary of Cluster Test Result
summary.cluster.test Provides Summary of Cluster Test Result
summary.cluster.test.reps Provides Summary of Cluster Test Result