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| ld.design | Functions for design of experiments to detect linkage disequilibrium |
| ld.power | Functions for design of experiments to detect linkage disequilibrium |
| ld.sim | Functions to simulate populations with a bi-allelic marker and QTL in linkage disequilibrium and test for association. |
| ld.sim1 | Functions to simulate populations with a bi-allelic marker and QTL in linkage disequilibrium and test for association. |
| luo.ld.populations | Luo's Linkage disequilibrium example populations |
| luo.ld.power | Classical deterministic power calculation for association studies to detect linkage disequilibrium |
| oneway.bf.alpha | Correspondence between significance levels and Bayes factors for effects of marker genotype classes. |
| oneway.bf.alpha.required | Correspondence between significance levels and Bayes factors for effects of marker genotype classes. |
| SS.oneway.bf | Bayes factors for one-way analysis of variance models. |