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A B C D E F I J L M N O P Q R S T U W
| activeCases | Calculator for Multi-State Path Models |
| activeCases-method | Calculator for Multi-State Path Models |
| activeCases<- | Calculator for Multi-State Path Models |
| activeCases<--method | Calculator for Multi-State Path Models |
| activeCases<--methods | Calculator for Multi-State Path Models |
| addResult | Add a Job Run's Results to the Analyzer |
| addResult-method | Class "runTime" |
| alldone | Distributed Calculation Shut-Down |
| bitMask | Class "readingError" |
| bitMask-method | Class "readingError" |
| boolMask | Class "readingError" |
| boolMask-method | Class "readingError" |
| calculate | calculate |
| calculate-method | calculate |
| calculate-methods | calculate |
| checkpoint | Checkpointing and progress information |
| coef-method | Results of a multi-state path calculation |
| coef-method | Class "mspathCoefficients" |
| coef-method | mspathEstimatedCoefficients |
| coef-method | Class "readingError" |
| cpuTime | Class "runTime" |
| cpuTime-method | Class "runTime" |
| deltamethod | The delta method |
| done | Finished with a Calculator |
| done-method | Finished with a Calculator |
| done-methods | Finished with a Calculator |
| doTrials | Run trials until told to stop |
| e2 | Allowed Misclassifications: e2 |
| effort | Get measures of effort to perform a calculation |
| effort-method | Get measures of effort to perform a calculation |
| effort-methods | Get measures of effort to perform a calculation |
| endTime | Class "runTime" |
| endTime-method | Class "runTime" |
| estimateWork | Estimate Amount of Work for Computations |
| estimateWork-method | Estimate Amount of Work for Computations |
| estimateWork-methods | Estimate Amount of Work for Computations |
| expit | Inverse logit function |
| fixedSchedule | fixedSchedule |
| isAllFixed | Test for fixed objects |
| isAllFixed-method | Test for fixed objects |
| isAllFixed-method | Class "mspathCoefficients" |
| isAllFixed-methods | Test for fixed objects |
| job | Class "runTime" |
| job-method | Class "runTime" |
| logit | Logit function |
| master | Start Multi-State Path Model Distributed Calculations on Master Node |
| matrixCoef | Class "mspathCoefficients" |
| matrixCoef-method | Results of a multi-state path calculation |
| matrixCoef-method | Class "mspathCoefficients" |
| matrixCoef-methods | Class "mspathCoefficients" |
| MatrixExp | Matrix exponential |
| mean-method | Class "readingError" |
| minus2loglik | Retrieve Multi-State Path Model Likelihood |
| minus2loglik-method | Retrieve Multi-State Path Model Likelihood |
| minus2loglik-method | Results of a multi-state path calculation |
| minus2loglik-methods | Retrieve Multi-State Path Model Likelihood |
| mpirank | Class "runTime" |
| mpirank-method | Class "runTime" |
| mpirank<- | Class "runTime" |
| mpirank<--method | Class "runTime" |
| mspath | Multi-state Path-Dependent Models |
| mspath-class | Results of a multi-state path calculation |
| mspath.subset | subset a dataset based on estimated work |
| mspathAbstractCalculator-class | Calculator for Multi-State Path Models |
| mspathCalculator | Constructors for mspathCalculator Objects |
| mspathCalculator-class | Calculator for Multi-State Path Models |
| mspathCalculatorFromArgs | Constructors for mspathCalculator Objects |
| mspathCoefficients | Class "mspathCoefficients" |
| mspathCoefficients-class | Class "mspathCoefficients" |
| mspathDistributedCalculator | Constructors for mspathCalculator Objects |
| mspathDistributedCalculator-class | Distributed Calculator for Multi-State Path Models |
| mspathDistributedCalculatorFactory | Make a Constructor for mspathCalculator Objects |
| mspathEstimatedCoefficients | mspathEstimatedCoefficients |
| mspathEstimatedCoefficients-class | mspathEstimatedCoefficients |
| mspathFull-class | Results of a multi-state path calculation |
| nActiveCases | Calculator for Multi-State Path Models |
| nActiveCases-method | Calculator for Multi-State Path Models |
| nActiveCases-methods | Calculator for Multi-State Path Models |
| nBadNodes | Results of a multi-state path calculation |
| nBadNodes-method | Results of a multi-state path calculation |
| nBadNodes-method | Calculator for Multi-State Path Models |
| nBadNodes-methods | Results of a multi-state path calculation |
| nCases | Results of a multi-state path calculation |
| nCases-method | Results of a multi-state path calculation |
| nCases-method | Calculator for Multi-State Path Models |
| nCases-methods | Results of a multi-state path calculation |
| newRun | Class to Analyze Runtimes |
| newRun-method | Class to Analyze Runtimes |
| nGoodNodes | Results of a multi-state path calculation |
| nGoodNodes-method | Results of a multi-state path calculation |
| nGoodNodes-method | Calculator for Multi-State Path Models |
| nGoodNodes-methods | Results of a multi-state path calculation |
| nGoodPathNodes | Results of a multi-state path calculation |
| nGoodPathNodes-method | Results of a multi-state path calculation |
| nGoodPathNodes-method | Calculator for Multi-State Path Models |
| nGoodPathNodes-methods | Results of a multi-state path calculation |
| nGoodPaths | Results of a multi-state path calculation |
| nGoodPaths-method | Results of a multi-state path calculation |
| nGoodPaths-method | Calculator for Multi-State Path Models |
| nGoodPaths-methods | Results of a multi-state path calculation |
| optimizeWork | Calculator for Multi-State Path Models |
| optimizeWork-method | Calculator for Multi-State Path Models |
| optimizeWork-methods | Calculator for Multi-State Path Models |
| optresults | Results of a multi-state path calculation |
| optresults-method | Results of a multi-state path calculation |
| optresults-methods | Results of a multi-state path calculation |
| optresults<- | Results of a multi-state path calculation |
| optresults<--method | Results of a multi-state path calculation |
| optresults<--methods | Results of a multi-state path calculation |
| params<- | Calculator for Multi-State Path Models |
| params<--method | Calculator for Multi-State Path Models |
| params<--method | Distributed Calculator for Multi-State Path Models |
| params<--methods | Calculator for Multi-State Path Models |
| print-method | Results of a multi-state path calculation |
| print-method | Class "mspathCoefficients" |
| print-method | mspathEstimatedCoefficients |
| printFooter | Results of a multi-state path calculation |
| printFooter-method | Results of a multi-state path calculation |
| printFooter-methods | Results of a multi-state path calculation |
| q2 | Allowed Transitions: q2 |
| readingError | Class "readingError" |
| readingError-class | Class "readingError" |
| remoteTime<- | Class "runTime" |
| remoteTime<--method | Class "runTime" |
| results | Retrieve Results of Multi-State Path Calculation |
| results-method | Retrieve Results of Multi-State Path Calculation |
| results-methods | Retrieve Results of Multi-State Path Calculation |
| runAnalyzer | Class to Analyze Runtimes |
| runAnalyzer-class | Class to Analyze Runtimes |
| runeverywhere | Top Level of Distributed Calculation for Multi-State Path Model |
| runTime | runTime constructor |
| runTime-class | Class "runTime" |
| sd-method | Results of a multi-state path calculation |
| sd-method | Class "mspathCoefficients" |
| sd-method | mspathEstimatedCoefficients |
| show-method | Results of a multi-state path calculation |
| show-method | Class "mspathCoefficients" |
| show-method | mspathEstimatedCoefficients |
| sim1 | HCV Progression after liver transplant |
| sim2 | HCV Progression after liver transplant |
| sim3 | HCV Progression after liver transplant |
| simulateObservations | Calculator for Multi-State Path Models |
| simulateObservations-method | Calculator for Multi-State Path Models |
| simulateObservations-methods | Calculator for Multi-State Path Models |
| slave | Prepare for Distributed Multi-State Path Model Computations on Slaves |
| smoosh | Analyze Runtime Estimates and Actual Values |
| smoosh-method | Class to Analyze Runtimes |
| startTime | Class "runTime" |
| startTime-method | Class "runTime" |
| trial | Class "trial" |
| trial-class | Class "trial" |
| useActualTimes | Calculator for Multi-State Path Models |
| useActualTimes-method | Calculator for Multi-State Path Models |
| useActualTimes-methods | Calculator for Multi-State Path Models |
| waitTime | Class "runTime" |
| waitTime-method | Class "runTime" |
| wallTime | Class "runTime" |
| wallTime-method | Class "runTime" |