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| phmm-package | Proportional Hazards with Mixed Model (PHMM) |
| AIC.phmm | Akaike Information Criterion for PHMM |
| cAIC | Conditional Akaike Information Criterion for PHMM |
| linear.predictors | PHMM Design |
| loglik.cond | PHMM conditional log-likelihood |
| phmm | Proportional Hazards Model with Mixed Effects |
| phmm.cond.loglik | PHMM conditional log-likelihood |
| phmm.design | PHMM Design |
| plot.phmm | Plots the convergence of MCMC-EM estimates from a PHMM |
| pseudoPoisPHMM | Pseudo poisson data for fitting PHMM via GLMM |
| traceHat | Trace of the "hat" matrix from PHMM-MCEM fit |
| traceHat.default | Trace of the "hat" matrix from PHMM-MCEM fit |