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A C D E F I L M N O P R S T U V W X
| secr-package | Spatially Explicit Capture-Recapture Models |
| AIC.secr | Compare SECR Models |
| animalID | Dissect Spatial Capture History Object |
| attenuationplot | Plot Detection Functions |
| autoini | Initial Parameter Values for SECR |
| captdata | Detection Dataset |
| capthist | Spatial Capture History Object |
| captXY | Demonstration Data |
| coef.secr | Coefficients of secr Object |
| collate | Model averaging for SECR Models |
| confint.secr | Profile Likelihood Confidence Intervals |
| counts | Summarise Detections |
| covariates | Covariates Attribute |
| covariates<- | Covariates Attribute |
| D.designdata | Construct Density Design Data |
| dbar | Home Range Statistics |
| derived | Derived Parameters of Fitted SECR Model |
| detectfnplot | Plot Detection Functions |
| detection functions | Detection Functions |
| detector | Detector Type |
| detector<- | Detector Type |
| deviance | Deviance of fitted secr model and residual degrees of freedom |
| deviance.secr | Deviance of fitted secr model and residual degrees of freedom |
| df.residual | Deviance of fitted secr model and residual degrees of freedom |
| df.residual.secr | Deviance of fitted secr model and residual degrees of freedom |
| distancetotrap | Distance To Nearest Detector |
| ellipse.secr | Confidence ellipse |
| esa | Derived Parameters of Fitted SECR Model |
| FAQ | Frequently Asked Questions, And Others |
| flip | Flip Points |
| flip.traps | Flip Detector Array |
| invlogit | Logit Transformation |
| ip.secr | Spatially Explicit Capture-Recapture by Inverse Prediction |
| LLsurface.secr | Plot likelihood surface |
| logit | Logit Transformation |
| LR.test | Likelihood Ratio Test for SECR Models |
| make.capthist | Construct capthist Object |
| make.circle | Build Detector Array |
| make.grid | Build Detector Array |
| make.mask | Build Habitat Mask |
| make.poly | Build Detector Array |
| make.transect | Build Detector Array |
| mask | Mask Object |
| model.average | Model averaging for SECR Models |
| MS.capthist | Combine capthist Objects |
| nearesttrap | Distance To Nearest Detector |
| occasion | Dissect Spatial Capture History Object |
| ovenbird | Ovenbird Mist-netting Dataset |
| ovenbird.model.1 | Ovenbird Mist-netting Dataset |
| ovenbird.model.1b | Ovenbird Mist-netting Dataset |
| ovenCH | Ovenbird Mist-netting Dataset |
| ovensong | Ovenbird Acoustic Dataset |
| pdot | Net Detection Probability |
| pfn | Spatially Explicit Capture-Recapture by Inverse Prediction |
| plot.capthist | Plot Detection Histories |
| plot.mask | Plot Habitat Mask |
| plot.popn | Plot popn Object |
| plot.secr | Plot Detection Functions |
| plot.traps | Plot traps Object |
| polyID | Detector Attributes |
| polyID<- | Detector Attributes |
| popn | Population Object |
| possum | Brushtail Possum Trapping Dataset |
| possum.model.1 | Brushtail Possum Trapping Dataset |
| possum.model.1b | Brushtail Possum Trapping Dataset |
| possumCH | Brushtail Possum Trapping Dataset |
| possummask | Brushtail Possum Trapping Dataset |
| predict.secr | SECR Model Predictions |
| print.capthist | Print Detections |
| print.mask | Print Habitat Mask |
| print.secr | Print secr Object |
| print.summary.capthist | Summarise Detections |
| print.summary.mask | Summarise Habitat Mask |
| print.summary.traps | Summarise Detector Array |
| print.traps | Print Detectors |
| rawdata | Demonstration Data |
| rbind.capthist | Combine capthist Objects |
| rbind.mask | Subset Mask Object |
| rbind.popn | Combine popn Objects |
| rbind.traps | Combine traps Objects |
| read.captures | Read Capture Data From File |
| read.mask | Read Habitat Mask From File |
| read.traps | Read Detector Data From File |
| reduce | Combine Columns |
| reduce.capthist | Combine Occasions |
| rotate | Rotate Points |
| rotate.traps | Rotate Detectors |
| RPSV | Home Range Statistics |
| score.table | Score Test for SECR Models |
| score.test | Score Test for SECR Models |
| searcharea | Detector Attributes |
| searcharea<- | Detector Attributes |
| secr | Spatially Explicit Capture-Recapture Models |
| secr density models | Density Models |
| secr detection models | Models for Detection Parameters |
| secr FAQ | Frequently Asked Questions, And Others |
| secr models | Spatially Explicit Capture-Recapture Models |
| secr.design.MS | Construct Detection Model Design Matrices and Lookups |
| secr.fit | Spatially Explicit Capture-Recapture |
| secr.make.newdata | Create Default Design Data |
| secr.model | Spatially Explicit Capture-Recapture Models |
| secr.model.density | Density Models |
| secr.model.detection | Models for Detection Parameters |
| secrdemo | SECR Models Fitted to Demonstration Data |
| secrdemo.0 | SECR Models Fitted to Demonstration Data |
| secrdemo.b | SECR Models Fitted to Demonstration Data |
| secrdemo.CL | SECR Models Fitted to Demonstration Data |
| session | Session Vector |
| session<- | Session Vector |
| shift | Shift Points |
| shift.traps | Shift Detectors |
| signal | Dissect Spatial Capture History Object |
| signal<- | Dissect Spatial Capture History Object |
| signalCH | Ovenbird Acoustic Dataset |
| sim.capthist | Simulate Detection Histories |
| sim.popn | Simulate 2-D Population |
| sim.resight | Simulate Detection Histories |
| sim.secr | Simulate From Fitted secr Model |
| simulate | Simulate From Fitted secr Model |
| simulate.secr | Simulate From Fitted secr Model |
| split.capthist | Subset or Split capthist Object |
| split.traps | Subset traps Object |
| subset.capthist | Subset or Split capthist Object |
| subset.mask | Subset Mask Object |
| subset.traps | Subset traps Object |
| summary.capthist | Summarise Detections |
| summary.mask | Summarise Habitat Mask |
| summary.traps | Summarise Detector Array |
| transectID | Detector Attributes |
| transectID<- | Detector Attributes |
| transectlength | Detector Attributes |
| trap | Dissect Spatial Capture History Object |
| traps | Detector Array |
| traps object | Detector Array |
| traps<- | Detector Array |
| trapXY | Demonstration Data |
| trim | Drop Unwanted List Components |
| trim.default | Drop Unwanted List Components |
| trim.secr | Drop Unwanted List Components |
| usage | Detector Usage |
| usage<- | Detector Usage |
| vcov.secr | Variance - Covariance Matrix of SECR Parameters |
| verify | Check SECR Data |
| verify.capthist | Check SECR Data |
| verify.default | Check SECR Data |
| verify.mask | Check SECR Data |
| verify.traps | Check SECR Data |
| write.capthist | Write Data to Text File |
| write.traps | Write Data to Text File |
| xy | Dissect Spatial Capture History Object |
| xy<- | Dissect Spatial Capture History Object |