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| advance.landscape | Code components to simulate a landscape |
| allelecount.landscape | Calculate allele numbers (frequency in the statistical sense) at each locus in each population |
| allelefreq.landscape | Calculate allele frequencies at each locus in each population |
| carry.landscape | Code components to simulate a landscape |
| clean.landscape | Function to resolve inconsistencies within a landscape |
| compress.landscape | Function to resolve inconsistencies within a landscape, deprecated |
| demography.landscape | Calculate demographic parameters |
| exp.het.landscape | Calculate expected heterozygosity |
| extinct.landscape | Code components to simulate a landscape |
| Fst.landscape | Calculates population structure statistic for the entire landscape |
| FWright.landscape | Calculates Wright's Fixation index at each locus in each population |
| is.landscape | Test whether an object is a (fairly) legitimate landscape |
| island | rmetasim landscape containing an island migration structure |
| landscape.democol | return a vector of population IDs from a landscape |
| landscape.locus | return a matrix containing genotypes for a particular locus |
| landscape.mismatchdist | Calculate a mismatch distribution for a locus in a landscape |
| landscape.states | return a matrix containing actual genotypes for a particular locus |
| landscape.to.rtheta | Converts genetic marker data in a landscape into a format suitable for analysis using ANOVA |
| locusvec | Provides convenient summarys of locus characteristics |
| modify.landscape.epoch | Modifies one of the landscape's epochs |
| new.epoch | Create an Epoch |
| new.epoch.island | Create an Island Model Epoch |
| new.example.landscape | Create a Default Landscape |
| new.floatparam.land | Create a set of floating point parameters |
| new.individuals | Fill a landscape with individuals |
| new.intparam.land | Create a set of integer parameters |
| new.landscape.empty | Create a Skeletal Landscape |
| new.local.demo | Create a Local Demography |
| new.locus | Add a locus |
| new.switchparam.land | Create a set of boolean parameters |
| obs.het.landscape | Calculate observed heterozygosity |
| ploidy | Provides convenient summarys of locus characteristics |
| popstruct | Calculates Weir and Cokerham's theta |
| populations | return a vector of population IDs from a landscape |
| read.landscape | Load a landscape from a file |
| reproduce.landscape | Code components to simulate a landscape |
| sim.landscape | Run a simulation for a single landscape through time |
| states | return a matrix containing actual genotypes for a particular locus |
| survive.landscape | Code components to simulate a landscape |
| theta.h.landscape | Calculate theta using heterozygosity |
| theta.k.landscape | Calculate theta using the number of alleles |
| theta.s.landscape | Calculate theta using segregating sites |
| write.landscape | Save a landscape to a file |
| write.landscape.foreign | Save a landscape to a file in a foreign format |