| aic |
Accesor and replacement methods for slots of complex objects |
| aic,FLSR-method |
Class FLSR |
| aic-methods |
Accesor and replacement methods for slots of complex objects |
| aic<-,FLSR,numeric-method |
Class FLSR |
| apply,FLBiol,list,function-method |
Class FLBiol |
| apply,FLIndex,list,function-method |
Class FLIndex |
| apply,FLQuant,ANY,ANY-method |
FLQuant class and methods |
| apply,FLStock,vector,function-method |
Class FLStock for fish stock data and modelling output |
| areaMeans |
Common summary operations for FLQuants |
| areaSums |
Common summary operations for FLQuants |
| as.data.frame,FLQuant,ANY,ANY-method |
FLQuant class and methods |
| as.data.frame,FLQuants,ANY,missing-method |
Class "FLQuants" |
| as.data.frame,FLStock,ANY,ANY-method |
Class FLStock for fish stock data and modelling output |
| as.FLBiol |
Method for creating an FLBiol object from other classes |
| as.FLBiol,FLBiol-method |
Method for creating an FLBiol object from other classes |
| as.FLBiol-methods |
Method for creating an FLBiol object from other classes |
| as.FLFleet |
as.FLFleet method |
| as.FLFleet,FLStock-method |
as.FLFleet method |
| as.FLFleet-method |
as.FLFleet method |
| as.FLIndex |
Method for creating an FLIndex object from other classes |
| as.FLIndex,FLFleet-method |
Method for creating an FLIndex object from other classes |
| as.FLIndex-methods |
Method for creating an FLIndex object from other classes |
| as.FLQuant |
as.FLQuant |
| as.FLQuant,array-method |
as.FLQuant |
| as.FLQuant,data.frame-method |
as.FLQuant |
| as.FLQuant,FLQuant-method |
as.FLQuant |
| as.FLQuant,matrix-method |
as.FLQuant |
| as.FLQuant,vector-method |
as.FLQuant |
| as.FLQuant-methods |
as.FLQuant |
| as.FLSR |
Method for creating an FLSR object from other classes. |
| as.FLSR,FLBiol-method |
Class FLBiol |
| as.FLSR,FLSR-method |
Method for creating an FLSR object from other classes. |
| as.FLSR,FLStock-method |
Class FLStock for fish stock data and modelling output |
| as.FLStock |
FLStock |
| as.FLStock,FLFleet-method |
FLStock |
| as.FLStock,FLFleets-method |
Class FLFleets |
| as.FLStock,FLStock-method |
FLStock |
| barchart,formula,FLQuant-method |
FLCore lattice methods |
| bevholt |
Stock-recruitment model function |
| bkey |
Lattice style bubble plots |
| bkey,list-method |
Lattice style bubble plots |
| bkey-methods |
Lattice style bubble plots |
| bt4 |
FLCore datasets |
| bubbles |
Lattice style bubble plots |
| bubbles,FLQuant-method |
Lattice style bubble plots |
| bubbles,FLQuants-method |
Lattice style bubble plots |
| bubbles,formula,FLQuant-method |
Lattice style bubble plots |
| bubbles,formula,FLQuants-method |
Class "FLQuants" |
| bubbles-methods |
Lattice style bubble plots |
| bwplot,formula,FLQuant-method |
FLCore lattice methods |
| catch |
Accesor and replacement methods for slots of complex objects |
| catch,FLCatch-method |
Class FLCatch |
| catch,FLQuant-method |
FLQuant class and methods |
| catch,FLStock-method |
Class FLStock for fish stock data and modelling output |
| catch-methods |
Accesor and replacement methods for slots of complex objects |
| catch.n |
Accesor and replacement methods for slots of complex objects |
| catch.n,FLCatch-method |
Class FLCatch |
| catch.n,FLIndex-method |
Class FLIndex |
| catch.n,FLStock-method |
Class FLStock for fish stock data and modelling output |
| catch.n-methods |
Accesor and replacement methods for slots of complex objects |
| catch.n<-,FLCatch,FLQuant-method |
Class FLCatch |
| catch.n<-,FLIndex,FLQuant-method |
Class FLIndex |
| catch.n<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
| catch.sel |
Accesor and replacement methods for slots of complex objects |
| catch.sel,FLCatch-method |
Class FLCatch |
| catch.sel-methods |
Accesor and replacement methods for slots of complex objects |
| catch.sel<-,FLCatch,FLQuant-method |
Class FLCatch |
| catch.wt |
Accesor and replacement methods for slots of complex objects |
| catch.wt,FLCatch-method |
Class FLCatch |
| catch.wt,FLIndex-method |
Class FLIndex |
| catch.wt,FLStock-method |
Class FLStock for fish stock data and modelling output |
| catch.wt-methods |
Accesor and replacement methods for slots of complex objects |
| catch.wt<-,FLCatch,FLQuant-method |
Class FLCatch |
| catch.wt<-,FLIndex,FLQuant-method |
Class FLIndex |
| catch.wt<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
| catch<-,FLCatch,FLQuant-method |
Class FLCatch |
| catch<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
| catch<-,FLStock,FLQuants-method |
Class FLStock for fish stock data and modelling output |
| catchability |
Accesor and replacement methods for slots of complex objects |
| catchability,FLCatch-method |
Class FLCatch |
| catchability-methods |
Accesor and replacement methods for slots of complex objects |
| catchability<-,FLCatch,FLQuant-method |
Class FLCatch |
| computeCatch |
Methods for estimating aggregated catch time series from dissagregated data |
| computeCatch,FLCatch-method |
Class FLCatch |
| computeCatch,FLIndex-method |
Methods for estimating aggregated catch time series from dissagregated data |
| computeCatch,FLStock-method |
Methods for estimating aggregated catch time series from dissagregated data |
| computeCatch-methods |
Methods for estimating aggregated catch time series from dissagregated data |
| computeDiscards |
Methods for estimating aggregated catch time series from dissagregated data |
| computeDiscards,FLCatch-method |
Class FLCatch |
| computeDiscards,FLStock-method |
Methods for estimating aggregated catch time series from dissagregated data |
| computeDiscards-methods |
Methods for estimating aggregated catch time series from dissagregated data |
| computeLandings |
Methods for estimating aggregated catch time series from dissagregated data |
| computeLandings,FLCatch-method |
Class FLCatch |
| computeLandings,FLStock-method |
Methods for estimating aggregated catch time series from dissagregated data |
| computeLandings-methods |
Methods for estimating aggregated catch time series from dissagregated data |
| covar |
Accesor and replacement methods for slots of complex objects |
| covar,FLSR-method |
Class FLSR |
| covar-methods |
Accesor and replacement methods for slots of complex objects |
| covar<-,FLSR,matrix-method |
Class FLSR |
| createFLAccesors |
Create accesor and replecement methods for slots of complex classes |
| data.list |
Creates data.frame with list of values |
| data.list,FLQuants-method |
Creates data.frame with list of values |
| data.list,list-method |
Creates data.frame with list of values |
| data.list-methods |
Creates data.frame with list of values |
| desc |
Accesor and replacement methods for slots of complex objects |
| desc,FLBiol-method |
Class FLBiol |
| desc,FLFleet-method |
FLFleet class and methods |
| desc,FLIndex-method |
Class FLIndex |
| desc,FLSR-method |
Class FLSR |
| desc,FLStock-method |
Class FLStock for fish stock data and modelling output |
| desc-methods |
Accesor and replacement methods for slots of complex objects |
| desc<-,FLBiol,character-method |
Class FLBiol |
| desc<-,FLFleet,character-method |
FLFleet class and methods |
| desc<-,FLIndex,character-method |
Class FLIndex |
| desc<-,FLSR,character-method |
Class FLSR |
| desc<-,FLStock,character-method |
Class FLStock for fish stock data and modelling output |
| dimnames<-,FLQuant-method |
FLQuant class and methods |
| dims |
Provide information onn the dimensions and range of an object |
| dims,FLIndex-method |
Provide information onn the dimensions and range of an object |
| dims,FLQuant-method |
Provide information onn the dimensions and range of an object |
| dims-methods |
Provide information onn the dimensions and range of an object |
| dimSums |
Common summary operations for FLQuants |
| discards |
Accesor and replacement methods for slots of complex objects |
| discards,FLCatch-method |
Class FLCatch |
| discards,FLQuant-method |
FLQuant class and methods |
| discards,FLStock-method |
Class FLStock for fish stock data and modelling output |
| discards-methods |
Accesor and replacement methods for slots of complex objects |
| discards.n |
Accesor and replacement methods for slots of complex objects |
| discards.n,FLCatch-method |
Class FLCatch |
| discards.n,FLStock-method |
Class FLStock for fish stock data and modelling output |
| discards.n-methods |
Accesor and replacement methods for slots of complex objects |
| discards.n<-,FLCatch,FLQuant-method |
Class FLCatch |
| discards.n<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
| discards.sel |
Accesor and replacement methods for slots of complex objects |
| discards.sel,FLCatch-method |
Class FLCatch |
| discards.sel-methods |
Accesor and replacement methods for slots of complex objects |
| discards.sel<-,FLCatch,FLQuant-method |
Class FLCatch |
| discards.wt |
Accesor and replacement methods for slots of complex objects |
| discards.wt,FLCatch-method |
Class FLCatch |
| discards.wt,FLStock-method |
Class FLStock for fish stock data and modelling output |
| discards.wt-methods |
Accesor and replacement methods for slots of complex objects |
| discards.wt<-,FLCatch,FLQuant-method |
Class FLCatch |
| discards.wt<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
| discards<-,FLCatch,FLQuant-method |
Class FLCatch |
| discards<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
| distribution |
Accesor and replacement methods for slots of complex objects |
| distribution,FLIndex-method |
Class FLIndex |
| distribution-methods |
Accesor and replacement methods for slots of complex objects |
| distribution<-,FLIndex,character-method |
Class FLIndex |
| dotplot,formula,FLQuant-method |
FLCore lattice methods |
| harvest |
Accesor and replacement methods for slots of complex objects |
| harvest,FLStock-method |
Class FLStock for fish stock data and modelling output |
| harvest-methods |
Accesor and replacement methods for slots of complex objects |
| harvest.spwn |
Accesor and replacement methods for slots of complex objects |
| harvest.spwn,FLStock-method |
Class FLStock for fish stock data and modelling output |
| harvest.spwn-methods |
Accesor and replacement methods for slots of complex objects |
| harvest.spwn<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
| harvest<-,FLStock,character-method |
Class FLStock for fish stock data and modelling output |
| harvest<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
| histogram,formula,FLQuant-method |
FLCore lattice methods |
| landings |
Accesor and replacement methods for slots of complex objects |
| landings,FLCatch-method |
Class FLCatch |
| landings,FLQuant-method |
FLQuant class and methods |
| landings,FLStock-method |
Class FLStock for fish stock data and modelling output |
| landings-methods |
Accesor and replacement methods for slots of complex objects |
| landings.n |
Accesor and replacement methods for slots of complex objects |
| landings.n,FLCatch-method |
Class FLCatch |
| landings.n,FLStock-method |
Class FLStock for fish stock data and modelling output |
| landings.n-methods |
Accesor and replacement methods for slots of complex objects |
| landings.n<-,FLCatch,FLQuant-method |
Class FLCatch |
| landings.n<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
| landings.sel |
Accesor and replacement methods for slots of complex objects |
| landings.sel,FLCatch-method |
Class FLCatch |
| landings.sel-methods |
Accesor and replacement methods for slots of complex objects |
| landings.sel<-,FLCatch,FLQuant-method |
Class FLCatch |
| landings.wt |
Accesor and replacement methods for slots of complex objects |
| landings.wt,FLCatch-method |
Class FLCatch |
| landings.wt,FLStock-method |
Class FLStock for fish stock data and modelling output |
| landings.wt-methods |
Accesor and replacement methods for slots of complex objects |
| landings.wt<-,FLCatch,FLQuant-method |
Class FLCatch |
| landings.wt<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
| landings<-,FLCatch,FLQuant-method |
Class FLCatch |
| landings<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
| lapply,FLIndices,function-method |
Class FLIndices |
| m |
Accesor and replacement methods for slots of complex objects |
| m,FLBiol-method |
Class FLBiol |
| m,FLStock-method |
Class FLStock for fish stock data and modelling output |
| m-methods |
Accesor and replacement methods for slots of complex objects |
| m.spwn |
Accesor and replacement methods for slots of complex objects |
| m.spwn,FLStock-method |
Class FLStock for fish stock data and modelling output |
| m.spwn-methods |
Accesor and replacement methods for slots of complex objects |
| m.spwn<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
| m<-,FLBiol,FLQuant-method |
Class FLBiol |
| m<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
| mat |
Accesor and replacement methods for slots of complex objects |
| mat,FLStock-method |
Class FLStock for fish stock data and modelling output |
| mat-methods |
Accesor and replacement methods for slots of complex objects |
| mat<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
| mcf |
Make compatible "FLQuant" objects |
| mcf,FLQuants-method |
Make compatible "FLQuant" objects |
| mcf,list-method |
Make compatible "FLQuant" objects |
| mcf-methods |
Make compatible "FLQuant" objects |
| mcmc |
Accesor and replacement methods for slots of complex objects |
| mcmc,FLSR-method |
Class FLSR |
| mcmc-methods |
Accesor and replacement methods for slots of complex objects |
| mcmc<-,FLSR,list-method |
Class FLSR |
| model |
Accesor and replacement methods for slots of complex objects |
| model,FLSR-method |
Class FLSR |
| model-methods |
Accesor and replacement methods for slots of complex objects |
| model<-,FLSR,character-method |
Class FLSR |
| n |
Accesor and replacement methods for slots of complex objects |
| n,FLBiol-method |
Class FLBiol |
| n-methods |
Accesor and replacement methods for slots of complex objects |
| n<-,FLBiol,FLQuant-method |
Class FLBiol |
| name |
Accesor and replacement methods for slots of complex objects |
| name,FLBiol-method |
Class FLBiol |
| name,FLCatch-method |
Class FLCatch |
| name,FLFleet-method |
FLFleet class and methods |
| name,FLIndex-method |
Class FLIndex |
| name,FLSR-method |
Class FLSR |
| name,FLStock-method |
Class FLStock for fish stock data and modelling output |
| name-methods |
Accesor and replacement methods for slots of complex objects |
| name<-,FLBiol,character-method |
Class FLBiol |
| name<-,FLCatch,character-method |
Class FLCatch |
| name<-,FLFleet,character-method |
FLFleet class and methods |
| name<-,FLIndex,character-method |
Class FLIndex |
| name<-,FLSR,character-method |
Class FLSR |
| name<-,FLStock,character-method |
Class FLStock for fish stock data and modelling output |
| names,FLQuant-method |
FLQuant class and methods |
| north.beam |
FLCore datasets |
| params |
Accesor and replacement methods for slots of complex objects |
| params,FLSR-method |
Class FLSR |
| params-methods |
Accesor and replacement methods for slots of complex objects |
| params<-,FLSR,matrix-method |
Class FLSR |
| params<-,FLSR,vector-method |
Class FLSR |
| params<-,FLSR-method |
Class FLSR |
| ple4 |
FLCore datasets |
| ple4sex |
FLCore datasets |
| plot,FLBiol,missing-method |
Class FLBiol |
| plot,FLCatch,missing-method |
Class FLCatch |
| plot,FLFleet,missing-method |
FLFleet class and methods |
| plot,FLIndex,missing-method |
Class FLIndex |
| plot,FLIndices,missing-method |
Class FLIndices |
| plot,FLQuant,missing-method |
FLQuant class and methods |
| plot,FLSR,missing-method |
Class FLSR |
| plot,FLStock,missing-method |
Class FLStock for fish stock data and modelling output |
| predict,FLSR-method |
Class FLSR |
| price |
Accesor and replacement methods for slots of complex objects |
| price,FLCatch-method |
Class FLCatch |
| price-methods |
Accesor and replacement methods for slots of complex objects |
| price<-,FLCatch,FLQuant-method |
Class FLCatch |
| qapply |
Apply a Function over the FLQuant slots of an FLR S4 object |
| qapply,FLIndex,function-method |
Class FLIndex |
| qapply,FLSR,function-method |
Class FLSR |
| qapply,FLStock,function-method |
Class FLStock for fish stock data and modelling output |
| qhstk |
Stock-recruitment model function |
| quant |
Quant, first dimension of FLQuant |
| quant,FLQuant-method |
FLQuant class and methods |
| quant-methods |
Quant, first dimension of FLQuant |
| quant<-,FLQuant-method |
FLQuant class and methods |
| quantMeans |
Common summary operations for FLQuants |
| quantSums |
Common summary operations for FLQuants |
| quantTotals |
Common summary operations for FLQuants |
| range,FLCatch-method |
Class FLCatch |
| range,FLStock-method |
Class FLStock for fish stock data and modelling output |
| range<-,FLCatch,numeric-method |
Class FLCatch |
| range<-,FLStock,numeric-method |
Class FLStock for fish stock data and modelling output |
| read.FLIndex |
Import FLIndices data from a file |
| read.FLIndices |
Import FLIndices data from a file |
| read.FLStock |
Import stock data from a file |
| read.VPAFile |
Import stock data from a file |
| rec |
Accesor and replacement methods for slots of complex objects |
| rec,FLSR-method |
Class FLSR |
| rec-methods |
Accesor and replacement methods for slots of complex objects |
| rec<-,FLSR,FLQuant-method |
Class FLSR |
| rechat |
Accesor and replacement methods for slots of complex objects |
| rechat,FLSR-method |
Class FLSR |
| rechat-methods |
Accesor and replacement methods for slots of complex objects |
| rechat<-,FLSR,FLQuant-method |
Class FLSR |
| residuals |
Accesor and replacement methods for slots of complex objects |
| residuals,FLSR-method |
Class FLSR |
| residuals-methods |
Accesor and replacement methods for slots of complex objects |
| residuals<-,FLSR,FLQuant-method |
Class FLSR |
| revenue |
Calculate the revenue of a fleet |
| revenue,FLFleet-method |
FLFleet class and methods |
| ricker |
Stock-recruitment model function |
| se |
Accesor and replacement methods for slots of complex objects |
| se,FLSR-method |
Class FLSR |
| se-methods |
Accesor and replacement methods for slots of complex objects |
| se<-,FLSR,numeric-method |
Class FLSR |
| seasonMeans |
Common summary operations for FLQuants |
| seasonSums |
Common summary operations for FLQuants |
| segreg |
Stock-recruitment model function |
| sel.pattern |
Accesor and replacement methods for slots of complex objects |
| sel.pattern,FLIndex-method |
Class FLIndex |
| sel.pattern-methods |
Accesor and replacement methods for slots of complex objects |
| sel.pattern<-,FLIndex,FLQuant-method |
Class FLIndex |
| setPlusGroup |
setPlusgroup for FLStock |
| setunits,FLBiol-method |
Class FLBiol |
| show,FLBiols-method |
Class FLBiols |
| show,FLQuant-method |
FLQuant class and methods |
| show,FLQuants-method |
Class "FLQuants" |
| sop |
Calculates the sum of products correction |
| south.beam |
FLCore datasets |
| spwn |
Accesor and replacement methods for slots of complex objects |
| spwn,FLBiol-method |
Class FLBiol |
| spwn-methods |
Accesor and replacement methods for slots of complex objects |
| spwn<-,FLBiol,FLQuant-method |
Class FLBiol |
| sr |
Stock-recruitment model function |
| srlkhd |
Likelihood of the S-R parameters |
| ssb |
Method for calculating Spawning Stock Biomass |
| ssb,FLSR-method |
Class FLSR |
| ssb,FLStock-method |
Class FLStock for fish stock data and modelling output |
| ssb-methods |
Accesor and replacement methods for slots of complex objects |
| ssb<-,FLSR,FLQuant-method |
Class FLSR |
| ssbpurec |
Method for calculating Spawning Stock Biomass per unit recruit |
| ssbpurec,FLStock-method |
Class FLStock for fish stock data and modelling output |
| steepvirginbiom |
Change to steepness/virgin biomass parameterisation |
| stock |
Accesor and replacement methods for slots of complex objects |
| stock,FLStock-method |
Class FLStock for fish stock data and modelling output |
| stock-methods |
Accesor and replacement methods for slots of complex objects |
| stock.n |
Accesor and replacement methods for slots of complex objects |
| stock.n,FLStock-method |
Class FLStock for fish stock data and modelling output |
| stock.n-methods |
Accesor and replacement methods for slots of complex objects |
| stock.n<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
| stock.wt |
Accesor and replacement methods for slots of complex objects |
| stock.wt,FLStock-method |
Class FLStock for fish stock data and modelling output |
| stock.wt-methods |
Accesor and replacement methods for slots of complex objects |
| stock.wt<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
| stock<-,FLStock,FLQuant-method |
Class FLStock for fish stock data and modelling output |
| stripplot,formula,FLQuant-method |
FLCore lattice methods |
| summary,FLBiol-method |
Class FLBiol |
| summary,FLBiols-method |
Class FLBiols |
| summary,FLCatch-method |
Class FLCatch |
| summary,FLFleet-method |
FLFleet class and methods |
| summary,FLFleets-method |
Class FLFleets |
| summary,FLIndex-method |
Class FLIndex |
| summary,FLIndices-method |
Class FLIndices |
| summary,FLQuant-method |
FLQuant class and methods |
| summary,FLQuants-method |
Class "FLQuants" |
| summary,FLSR-method |
Class FLSR |
| summary,FLStock-method |
Class FLStock for fish stock data and modelling output |
| summary,FLStocks-method |
Class FLStocks |
| window |
window for FLQuants based classes |
| window,FLBiol-method |
window for FLQuants based classes |
| window,FLCatch-method |
window for FLQuants based classes |
| window,FLFleet-method |
window for FLQuants based classes |
| window,FLIndex-method |
window for FLQuants based classes |
| window,FLIndices-method |
window for FLQuants based classes |
| window,FLQuant-method |
window for FLQuants based classes |
| window,FLStock-method |
window for FLQuants based classes |
| window-methods |
window for FLQuants based classes |
| write.FLStock |
Write FLStock data to a file |
| wt |
Accesor and replacement methods for slots of complex objects |
| wt,FLBiol-method |
Class FLBiol |
| wt-methods |
Accesor and replacement methods for slots of complex objects |
| wt<-,FLBiol,FLQuant-method |
Class FLBiol |