| setEnrichmentFactors {GOSim} | R Documentation |
Sets the depth and density enrichment factors for the enriched FuSSiMeg GO term similarity measure by Couto et al.
setEnrichmentFactors(alpha = 0.5, beta = 0.5)
alpha |
depth factor |
beta |
density factor |
none
The enrichment factors are stored internally and are used by the
function getTermSim, if one uses the method
"CoutoEnriched" to calculate GO term similarities
Holger Froehlich
F.Couto,M. Silva, P. Coutinho, Implementation of a Functional Semantic Similarity Measure between Gene-Products, DI/FCUL TR 03-29, Department of Informatics, University of Lisbon, 2003
setEnrichmentFactors(alpha=0.1,beta=0.5)
getTermSim(c("GO:0006955","GO:0007584"),method="CoutoEnriched")