| SNP.dat {SimHap} | R Documentation |
SNP.dat is an example genotypic data set containing single nucleotide polymorphism (SNP) genotypes.
data(SNP.dat)
A data frame with 180 observations on the following 5 variables.
IDSNP_1SNP_2SNP_3SNP_4
Simulated SNP data for use with pheno.dat
data(SNP.dat)
# transforms SNP.dat to an object containing 3 columns
# per SNP - additive, dominant and recessive, where genotypes
# defined in 'baseline' serve as the baseline genotypes
geno.dat <- SNP2Geno(SNP.dat, baseline=c("MM", "11", "GG", "CC"))
data(pheno.dat)
mymodel <- snp.quant(formula1=HDL~AGE+SBP+factor(SNP_1_add),
formula2=HDL~AGE+SBP, geno=geno.dat, pheno=pheno.dat)
summary(mymodel)