| summary.hapLong {SimHap} | R Documentation |
Summary method for objects of class snpLong
## S3 method for class 'hapLong':
summary(object, ...)
## S3 method for class 'summary.hapLong':
print(x, digits = max(3, getOption("digits") - 3),
signif.stars = getOption("show.signif.stars"), ...)
object |
an object of class hapLong, a result of a call to haplo.long. |
x |
an object of class summary.hapLong, the result of a call to summary.hapLong. |
digits |
the number of significant digits to use when printing. |
signif.stars |
logical. If TRUE, ``significance stars" are printed for each coefficient. |
... |
further arguments passed to or from other methods. |
summary.hapLong returns an object of class summary.hapLong. A list with components
fixed_formula |
fixed effects formula used in haplo.long. |
random_formula |
random effects formula used in haplo.long. |
coefficients |
summarized results from fitted model, including coefficients, standard errors and p-values. |
empiricalResults |
a list containing the coefficients, standard errors and p-values calculated at each simulation of haplo.long. |
AIC |
Akaike Information Criterion for the model fitted in haplo.long. |
corStruct |
the correlation structure specified in haplo.long. |
effect |
the haplotypic effect modelled: `ADDITIVE', `DOMINANT' or `RECESSIVE'. |
Pamela A. McCaskie
McCaskie, P.A., Carter, K.W. Hazelton, M., Palmer, L.J. (2007) SimHap: A comprehensive modeling framework for epidemiological outcomes and a multiple-imputation approach to haplotypic analysis of population-based data, [online] www.genepi.org.au/simhap.
data(SNPlong.dat)
# convert SNP.dat to format required by infer.haplos
longHaplo.dat <- SNP2Haplo(SNPlong.dat)
data(longPheno.dat)
myinfer<-infer.haplos(longHaplo.dat)
myinfer$hap.freq
myhaplo<-make.haplo.rare(myinfer,min.freq=0.05)
mymodel <- haplo.long(fixed=fev1f~h.ACV2, random=~1|id,
pheno=longPheno.dat, haplo=myhaplo, form=~year|id, sim=10)
summary(mymodel)