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| epi.bin | Epidemiological analysis for binary outcomes |
| epi.cc.match | Epidemiological analysis for matched case-control data |
| epi.long | Epidemiological analysis for longitudinal data |
| epi.quant | Epidemiological analysis for quantitative outcomes |
| epi.surv | Epidemiological analysis for survival data |
| haplo.bin | Haplotype analysis for a binary trait |
| haplo.cc.match | Haplotype analysis for matched case-control data |
| haplo.long | Haplotype analysis for a longitudinal data |
| haplo.quant | Haplotype analysis for a Normally distributed quantitative trait |
| haplo.surv | Haplotype analysis for survival data |
| infer.haplos | Infer haplotype configurations when phase is unknown |
| infer.haplos.cc | Infer haplotype configuration independently in cases and controls |
| longPheno.dat | Example phenotypic, longitudinal data |
| make.haplo.rare | Group rare haplotypes together |
| pheno.dat | Example phenotypic data |
| prepare.cc | Prepare case-control data for inferring haplotypes |
| print.summary.epiBin | Summarizing epidemiological analysis models for binary outcomes |
| print.summary.epiClogit | Summarizing epidemiological analysis models for matched case-control data |
| print.summary.epiLong | Summarizing epidemiological analysis models for longitudinal data |
| print.summary.epiQuant | Summarizing epidemiological analysis models for quantitative outcomes |
| print.summary.epiSurv | Summarizing epidemiological analysis models for survival data |
| print.summary.hapBin | Summarize binary haplotype analysis models |
| print.summary.hapClogit | Summarize haplotype analysis models for matched case-control data |
| print.summary.hapLong | Summarizing single SNP analysis models for longitudinal data |
| print.summary.hapQuant | Summarize quantitative haplotype analysis models |
| print.summary.hapSurv | Summarize haplotype analysis models for survival data |
| print.summary.snpBin | Summarizing Single SNP analysis models |
| print.summary.snpClogit | Summarizing Single SNP analysis models for matched case-control data |
| print.summary.snpLong | Summarizing single SNP analysis models for longitudinal data |
| print.summary.snpQuant | Summarizing single SNP analysis models for quantitative outcomes |
| print.summary.snpSurv | Summarizing Single SNP analysis models for survival data |
| snp.bin | Single SNP analysis for binary outcomes |
| snp.cc.match | Single SNP analysis for matched case-control data |
| SNP.dat | Example genotypic data |
| snp.long | Single SNP analysis for longitudinal data |
| snp.quant | Single SNP analysis for quantitative outcomes |
| snp.surv | Single SNP analysis for survival data |
| SNP2Geno | Convert biallelic SNP data to genotype count data |
| SNP2Haplo | Convert biallelic SNP data to haplo format |
| SNPlong.dat | Example genotypic data for longitudinal analysis |
| SNPsurv.dat | Example genotypic data for survival analysis |
| summary.epiBin | Summarizing epidemiological analysis models for binary outcomes |
| summary.epiClogit | Summarizing epidemiological analysis models for matched case-control data |
| summary.epiLong | Summarizing epidemiological analysis models for longitudinal data |
| summary.epiQuant | Summarizing epidemiological analysis models for quantitative outcomes |
| summary.epiSurv | Summarizing epidemiological analysis models for survival data |
| summary.hapBin | Summarize binary haplotype analysis models |
| summary.hapClogit | Summarize haplotype analysis models for matched case-control data |
| summary.hapLong | Summarizing single SNP analysis models for longitudinal data |
| summary.hapQuant | Summarize quantitative haplotype analysis models |
| summary.hapSurv | Summarize haplotype analysis models for survival data |
| summary.snpBin | Summarizing Single SNP analysis models |
| summary.snpClogit | Summarizing Single SNP analysis models for matched case-control data |
| summary.snpLong | Summarizing single SNP analysis models for longitudinal data |
| summary.snpQuant | Summarizing single SNP analysis models for quantitative outcomes |
| summary.snpSurv | Summarizing Single SNP analysis models for survival data |
| survPheno.dat | Example phenotypic survival data |