Vector Generalized Linear and Additive Models

Documentation for package `VGAM' version 0.7-4

Help Pages

A B C D E F G H I L M N O P Q R S T U V W Y Z misc

-- --

VGAM-package

Vector Generalized Linear and Additive Models

-- A --

A1A2A3	Undocumented and Internally Used Functions and Classes
a2m	Undocumented and Internally Used Functions and Classes
AA.Aa.aa	The AA-Aa-aa Blood Group System
AAaa.nohw	Undocumented and Internally Used Functions and Classes
AB.Ab.aB.ab	The AB-Ab-aB-ab Blood Group System
AB.Ab.aB.ab2	The AB-Ab-aB-ab2 Blood Group System
ABO	The ABO Blood Group System
acat	Ordinal Regression with Adjacent Categories Probabilities
add1	Undocumented and Internally Used Functions and Classes
alsqreg	Asymmetric Least Squares Quantile Regression
aml	Acute Myelogenous Leukemia Survival Data
anova.vgam	Undocumented and Internally Used Functions and Classes
anova.vglm	Undocumented and Internally Used Functions and Classes
as.character.SurvS4	Create a Survival Object
as.data.frame.SurvS4	Create a Survival Object
attrassign,lm-method	Undocumented Methods Functions
auuc	Auckland University Undergraduate Counts

-- B --

Benini	The Benini Distribution
benini	Benini Distribution Family Function
beta4	Undocumented and Internally Used Functions and Classes
Betabin	The Beta-Binomial Distribution
betabin.ab	Beta-binomial Distribution Family Function
betabinomial	Beta-binomial Distribution Family Function
betaff	The Two-parameter Beta Distribution Family Function
betaffqn	Undocumented and Internally Used Functions and Classes
Betageom	The Beta-Geometric Distribution
betageometric	Beta-geometric Distribution Family Function
betaII	Beta Distribution of the Second Kind
Betanorm	The Beta-Normal Distribution
betaprime	The Beta-Prime Distribution
bilogis4	Bivariate Logistic Distribution
bilogistic4	Bivariate Logistic Distribution Family Function
binom2.or	Bivariate Logistic Regression
binom2.rho	Bivariate Probit Model
binomialff	Binomial Family Function
biplot	Undocumented and Internally Used Functions and Classes
biplot,qrrvglm-method	Biplot of Constrained Regression Models
biplot,rrvglm-method	Biplot of Constrained Regression Models
biplot.qrrvglm	Undocumented and Internally Used Functions and Classes
biplot.rrvglm	Latent Variable Plot for RR-VGLMs
Bisa	The Birnbaum-Saunders Distribution
bisa	Birnbaum-Saunders Distribution Family Function
bminz	Body Mass Index of New Zealand Adults
borel.tanner	Undocumented and Internally Used Functions and Classes
Brat	Inputting Data to fit a Bradley Terry Model
brat	Bradley Terry Model
bratt	Bradley Terry Model With Ties
bs	Undocumented and Internally Used Functions and Classes

-- C --

calibrate	Model Calibrations
calibrate,cao-method	Undocumented Methods Functions
calibrate,Coef.qrrvglm-method	Calibration for Constrained Regression Models
calibrate,qrrvglm-method	Undocumented Methods Functions
calibrate,rrvglm-method	Calibration for Constrained Regression Models
calibrate,uqo-method	Undocumented Methods Functions
calibrate.qrrvglm	Calibration for CQO, UQO and CAO models
calibrate.qrrvglm.control	Control function for CQO/UQO/CAO calibration
cao	Fitting Constrained Additive Ordination (CAO)
cao-class	Undocumented and Internally Used Functions and Classes
cao.control	Control Function for RR-VGAMs (CAO)
car.all	Undocumented and Internally Used Functions and Classes
cauchit	Cauchit Link Function
cauchy1	Cauchy Distribution Family Function
ccoef	Extract Model Constrained/Canonical Coefficients
ccoef,cao-method	Constrained (Canonical) Coefficients
ccoef,Coef.cao-method	Constrained (Canonical) Coefficients
ccoef,Coef.qrrvglm-method	Constrained (Canonical) Coefficients
ccoef,Coef.rrvglm-method	Constrained (Canonical) Coefficients
ccoef,qrrvglm-method	Constrained (Canonical) Coefficients
ccoef,rrvglm-method	Constrained (Canonical) Coefficients
ccoef-method	Constrained (Canonical) Coefficients
ccoef.cao	Undocumented and Internally Used Functions and Classes
ccoef.Coef.cao	Undocumented and Internally Used Functions and Classes
ccoef.Coef.qrrvglm	Undocumented and Internally Used Functions and Classes
ccoef.qrrvglm	Undocumented and Internally Used Functions and Classes
cdf	Undocumented and Internally Used Functions and Classes
cdf,vgam-method	Undocumented Methods Functions
cdf,vglm-method	Undocumented Methods Functions
cdf.lms.bcg	Undocumented and Internally Used Functions and Classes
cdf.lms.bcn	Undocumented and Internally Used Functions and Classes
cdf.lms.yjn	Undocumented and Internally Used Functions and Classes
cdf.lmscreg	Cumulative Distribution Function for LMS Quantile Regression
cdf.vglm	Undocumented and Internally Used Functions and Classes
cgo	Redirects the user to cqo
cgumbel	Censored Gumbel Distribution
chest	Chest Pain in NZ Adults
chisq	Chi-squared Distribution
clo	Redirects the user to rrvglm
cloglog	Complementary Log-log Link Function
cnormal1	Censored Normal Distribution
coalminers	Breathlessness and Wheeze Amongst Coalminers
Coef	Computes Model Coefficients and Quantities
Coef,cao-method	Undocumented Methods Functions
coef,cao-method	Undocumented Methods Functions
Coef,qrrvglm-method	Undocumented Methods Functions
coef,qrrvglm-method	Undocumented Methods Functions
Coef,rrvglm-method	Undocumented Methods Functions
Coef,uqo-method	Undocumented Methods Functions
coef,uqo-method	Undocumented Methods Functions
coef,vglm-method	Undocumented Methods Functions
Coef,vlm-method	Undocumented Methods Functions
coef,vlm-method	Undocumented Methods Functions
coef,vsmooth.spline-method	Undocumented Methods Functions
coef,vsmooth.spline.fit-method	Undocumented Methods Functions
Coef.cao	Undocumented and Internally Used Functions and Classes
Coef.cao-class	Undocumented and Internally Used Functions and Classes
Coef.qrrvglm	Returns Important Matrices etc. of a QO Object
Coef.qrrvglm-class	Class ``Coef.qrrvglm''
Coef.rrvglm	Returns Important Matrices etc. of a RR-VGLM Object
Coef.rrvglm-class	Class ``Coef.rrvglm''
Coef.uqo-class	Undocumented and Internally Used Functions and Classes
Coef.vlm	Extract Model Coefficients for VLM Objects
Coefficients	Undocumented and Internally Used Functions and Classes
coefficients	Undocumented and Internally Used Functions and Classes
coefficients,cao-method	Undocumented Methods Functions
coefficients,qrrvglm-method	Undocumented Methods Functions
coefficients,uqo-method	Undocumented Methods Functions
coefficients,vglm-method	Undocumented Methods Functions
Coefficients,vlm-method	Undocumented Methods Functions
coefficients,vlm-method	Undocumented Methods Functions
coefficients,vsmooth.spline-method	Undocumented Methods Functions
coefficients,vsmooth.spline.fit-method	Undocumented Methods Functions
coefqrrvglm	Undocumented and Internally Used Functions and Classes
coefvlm	Undocumented and Internally Used Functions and Classes
coefvsmooth.spline	Undocumented and Internally Used Functions and Classes
constraints	Constraint Matrices
constraints,vlm-method	Undocumented Methods Functions
constraints.vlm	Undocumented and Internally Used Functions and Classes
cqo	Fitting Constrained Quadratic Ordination (CQO)
cratio	Ordinal Regression with Continuation Ratios
crayleigh	Rayleigh Distribution Family Function
cumulative	Ordinal Regression with Cumulative Probabilities
Cut	Undocumented and Internally Used Functions and Classes

-- D --

d2theta.deta2	Undocumented and Internally Used Functions and Classes
Dagum	The Dagum Distribution
dagum	Dagum Distribution Family Function
dbenini	The Benini Distribution
dbetabin	The Beta-Binomial Distribution
dbetageom	The Beta-Geometric Distribution
dbetanorm	The Beta-Normal Distribution
dbilogis4	Bivariate Logistic Distribution
dbisa	The Birnbaum-Saunders Distribution
dcnormal1	Univariate Normal Distribution with Double Censoring
ddagum	The Dagum Distribution
deplot	Undocumented and Internally Used Functions and Classes
deplot,vgam-method	Undocumented Methods Functions
deplot,vglm-method	Undocumented Methods Functions
deplot.default	Undocumented and Internally Used Functions and Classes
deplot.lms.bcg	Undocumented and Internally Used Functions and Classes
deplot.lms.bcn	Undocumented and Internally Used Functions and Classes
deplot.lms.yjn	Undocumented and Internally Used Functions and Classes
deplot.lmscreg	Density Plot for LMS Quantile Regression
deplot.vglm	Undocumented and Internally Used Functions and Classes
deviance	Undocumented and Internally Used Functions and Classes
deviance,qrrvglm-method	Undocumented Methods Functions
deviance,uqo-method	Undocumented Methods Functions
deviance,vglm-method	Undocumented Methods Functions
deviance,vlm-method	Undocumented Methods Functions
Deviance.categorical.data.vgam	Undocumented and Internally Used Functions and Classes
deviance.uqo	Undocumented and Internally Used Functions and Classes
deviance.vglm	Undocumented and Internally Used Functions and Classes
deviance.vlm	Undocumented and Internally Used Functions and Classes
dexpbinomial	Double Exponential Binomial Distribution Family Function
df.residual	Undocumented and Internally Used Functions and Classes
df.residual,vlm-method	Undocumented Methods Functions
df.residual.vlm	Undocumented and Internally Used Functions and Classes
dfisk	The Fisk Distribution
dfrank	Frank's Bivariate Distribution
dfrechet	The Frechet Distribution
dgev	The Generalized Extreme Value Distribution
dggamma	The Generalized Gamma Distribution
dgpd	The Generalized Pareto Distribution
dgumbel	The Gumbel Distribution
dhzeta	Haight's Zeta Function
dimm	Undocumented and Internally Used Functions and Classes
dinv.gaussian	The Inverse Gaussian Distribution
dinvlomax	The Inverse Lomax Distribution
dinvparalogistic	The Inverse Paralogistic Distribution
dirichlet	Fitting a Dirichlet Distribution
dirmul.old	Fitting a Dirichlet-Multinomial Distribution
dirmultinomial	Fitting a Dirichlet-Multinomial Distribution
dlaplace	The Laplace Distribution
dlgamma	The Log-Gamma Distribution
dlino	The Generalized Beta Distribution (Libby and Novick, 1982)
dlog	Logarithmic Distribution
dlomax	The Lomax Distribution
dmaxwell	The Maxwell Distribution
dnaka	Nakagami Distribution
dnorm2	Undocumented and Internally Used Functions and Classes
dotC	Undocumented and Internally Used Functions and Classes
dotFortran	Undocumented and Internally Used Functions and Classes
dparalogistic	The Paralogistic Distribution
dpareto	The Pareto Distribution
dparetoI	The Pareto(IV/III/II) Distributions
dparetoII	The Pareto(IV/III/II) Distributions
dparetoIII	The Pareto(IV/III/II) Distributions
dparetoIV	The Pareto(IV/III/II) Distributions
dpolono	The Poisson Lognormal Distribution
dposbinom	Positive-Binomial Distribution
dposnorm	The Positive-Normal Distribution
dpospois	Positive-Poisson Distribution
drayleigh	The Rayleigh Distribution
dsinmad	The Singh-Maddala Distribution
dsnorm	Skew-Normal Distribution
dtheta.deta	Undocumented and Internally Used Functions and Classes
dtikuv	A Short-tailed Symmetric Distribution
dtpareto	The Truncated Pareto Distribution
dtriangle	The Triangle Distribution
dzeta	The Zeta Distribution
dzibinom	Zero-Inflated Binomial Distribution
dzipf	The Zipf Distribution
dzipois	Zero-Inflated Poisson Distribution

-- E --

effects	Undocumented and Internally Used Functions and Classes
effects,vlm-method	Undocumented Methods Functions
egev	Generalized Extreme Value Distribution Family Function
egumbel	Gumbel Distribution Family Function
elogit	Logit Link Function
enzyme	Enzyme Data
erf	Error Function
erfc	Undocumented and Internally Used Functions and Classes
erlang	Erlang Distribution
eta2theta	Undocumented and Internally Used Functions and Classes
expexp	Exponentiated Exponential Distribution
expexp1	Exponentiated Exponential Distribution
exponential	Exponential Distribution

-- F --

family.vglm	Undocumented and Internally Used Functions and Classes
fff	F Distribution Family Function
fff.control	Undocumented and Internally Used Functions and Classes
fgm	Farlie-Gumbel-Morgenstern's Bivariate Distribution Family Function
fill	Creates a Matrix of Appropriate Dimension
fill1	Creates a Matrix of Appropriate Dimension
fill2	Undocumented and Internally Used Functions and Classes
fill3	Undocumented and Internally Used Functions and Classes
fisherz	Fisher's Z Link Function
Fisk	The Fisk Distribution
fisk	Fisk Distribution family function
fitted	Undocumented and Internally Used Functions and Classes
fitted,qrrvglm-method	Undocumented Methods Functions
fitted,uqo-method	Undocumented Methods Functions
fitted,vglm-method	Undocumented Methods Functions
fitted,vlm-method	Undocumented Methods Functions
fitted,vsmooth.spline-method	Undocumented Methods Functions
fitted.values	Undocumented and Internally Used Functions and Classes
fitted.values,qrrvglm-method	Undocumented Methods Functions
fitted.values,uqo-method	Undocumented Methods Functions
fitted.values,vglm-method	Undocumented Methods Functions
fitted.values,vlm-method	Undocumented Methods Functions
fitted.values,vsmooth.spline-method	Undocumented Methods Functions
fitted.values.uqo	Undocumented and Internally Used Functions and Classes
fitted.values.vlm	Fitted Values of a VLM object
fitted.vlm	Fitted Values of a VLM object
fittedvsmooth.spline	Undocumented and Internally Used Functions and Classes
format.SurvS4	Create a Survival Object
Frank	Frank's Bivariate Distribution
frank	Frank's Bivariate Distribution Family Function
Frechet	The Frechet Distribution
frechet2	Frechet Distribution Family Function
frechet3	Frechet Distribution Family Function
freund61	Freund's (1961) Bivariate Extension of the Exponential Distribution
fsqrt	Folded Square Root Link Function

-- G --

G1G2G3	The G1G2G3 Blood Group System
gamma1	1-parameter Gamma Distribution
gamma2	2-parameter Gamma Distribution
gamma2.ab	2-parameter Gamma Distribution
gammaff	Undocumented and Internally Used Functions and Classes
gammahyp	Gamma Hyperbola Bivariate Distribution
garma	GARMA (Generalized Autoregressive Moving-Average) Models
gaussianff	Gaussian (normal) Family Function
genbetaII	Generalized Beta Distribution of the Second Kind
genpoisson	Generalized Poisson distribution
geometric	Geometric Distribution
get.smart	Retrieve One Component of ``.smart.prediction''
get.smart.prediction	Retrieves ``.smart.prediction''
gev	Generalized Extreme Value Distribution Family Function
gevUC	The Generalized Extreme Value Distribution
gew	General Electric and Westinghouse Data
ggamma	Generalized Gamma distribution family function
ggammaUC	The Generalized Gamma Distribution
glm	Undocumented and Internally Used Functions and Classes
golf	Gamma-Ordinal Link Function
gpd	Generalized Pareto Distribution Family Function
gpdUC	The Generalized Pareto Distribution
grc	Fitting Goodman's RC Association Model
grc-class	Undocumented and Internally Used Functions and Classes
gumbel	Gumbel Distribution Family Function
gumbelIbiv	Gumbel's Type I Bivariate Distribution Family Function
guplot	Gumbel Plot
guplot,numeric-method	Undocumented Methods Functions
guplot,vlm-method	Undocumented Methods Functions
guplot.default	Gumbel Plot
guplot.vlm	Gumbel Plot

-- H --

hspider	Hunting Spider Data
hunua	Hunua Ranges Data
hyperg	Hypergeometric Family Function
hypersecant	Hyperbolic Secant Distribution Family Function
Hzeta	Haight's Zeta Function
hzeta	Haight's Zeta Family Function

-- I --

iam	Index from Array to Matrix
identity	Identity Link Function
Inv.gaussian	The Inverse Gaussian Distribution
inv.gaussianff	Inverse Gaussian Distribution Family Function
invbinomial	Undocumented and Internally Used Functions and Classes
inverse.gaussianff	Undocumented and Internally Used Functions and Classes
InverseBrat	Undocumented and Internally Used Functions and Classes
Invlomax	The Inverse Lomax Distribution
invlomax	Inverse Lomax Distribution Family Function
Invparalogistic	The Inverse Paralogistic Distribution
invparalogistic	Inverse Paralogistic Distribution Family Function
is.bell	Undocumented and Internally Used Functions and Classes
is.bell,cao-method	Undocumented Methods Functions
is.bell,Coef.qrrvglm-method	Undocumented Methods Functions
is.bell,qrrvglm-method	Undocumented Methods Functions
is.bell,rrvglm-method	Undocumented Methods Functions
is.bell,uqo-method	Undocumented Methods Functions
is.bell,vlm-method	Undocumented Methods Functions
is.bell.cao	Undocumented and Internally Used Functions and Classes
is.bell.qrrvglm	Undocumented and Internally Used Functions and Classes
is.bell.rrvglm	Undocumented and Internally Used Functions and Classes
is.bell.vlm	Undocumented and Internally Used Functions and Classes
is.na.SurvS4	Create a Survival Object
is.Numeric	Undocumented and Internally Used Functions and Classes
is.smart	Test For a Smart Object
is.SurvS4	Create a Survival Object

-- L --

laplace	Laplace Distribution
leipnik	Leipnik Distribution Family Function
lerch	Lerch Phi Function
leukemia	Acute Myelogenous Leukemia Survival Data
levy	Levy Distribution Family Function
lgamma3ff	Log-gamma Distribution Family Function
lgammaff	Log-gamma Distribution Family Function
lgammaUC	The Log-Gamma Distribution
Links	Link functions for VGLM/VGAM/etc. families
Lino	The Generalized Beta Distribution (Libby and Novick, 1982)
lino	Generalized Beta Distribution Family Function
lirat	Low-iron Rat Teratology Data
lm	Undocumented and Internally Used Functions and Classes
lm2qrrvlm.model.matrix	Undocumented and Internally Used Functions and Classes
lm2vlm.model.matrix	Undocumented and Internally Used Functions and Classes
lms.bcg	LMS Quantile Regression with a Box-Cox transformation to a Gamma Distribution
lms.bcg.control	Undocumented and Internally Used Functions and Classes
lms.bcn	LMS Quantile Regression with a Box-Cox Transformation to Normality
lms.bcn.control	Undocumented and Internally Used Functions and Classes
lms.yjn	LMS Quantile Regression with a Yeo-Johnson Transformation to Normality
lms.yjn.control	Undocumented and Internally Used Functions and Classes
lmscreg.control	Undocumented and Internally Used Functions and Classes
Log	Logarithmic Distribution
logc	Complementary-log Link Function
loge	Log link function
logff	Logarithmic Distribution
logistic	Logistic Distribution Family Function
logistic1	Logistic Distribution Family Function
logistic2	Logistic Distribution Family Function
logit	Logit Link Function
logLik,summary.vglm-method	Undocumented Methods Functions
logLik,vlm-method	Undocumented Methods Functions
logLik.vlm	Undocumented and Internally Used Functions and Classes
loglinb2	Loglinear Model for Two Binary Responses
loglinb3	Loglinear Model for Three Binary Responses
loglog	Log-log Link Function
lognormal	Lognormal Distribution
lognormal3	Lognormal Distribution
logoff	Log link function with an offset
Lomax	The Lomax Distribution
lomax	Lomax Distribution Family Function
lv	Latent Variables
lv,cao-method	Undocumented Methods Functions
lv,Coef.cao-method	Undocumented Methods Functions
lv,Coef.qrrvglm-method	Undocumented Methods Functions
lv,Coef.rrvglm-method	Undocumented Methods Functions
lv,qrrvglm-method	Undocumented Methods Functions
lv,rrvglm-method	Undocumented Methods Functions
lv,uqo-method	Undocumented Methods Functions
lv.cao	Undocumented and Internally Used Functions and Classes
lv.Coef.cao	Undocumented and Internally Used Functions and Classes
lv.Coef.qrrvglm	Undocumented and Internally Used Functions and Classes
lv.qrrvglm	Undocumented and Internally Used Functions and Classes
lvplot	Latent Variable Plot
lvplot,cao-method	Undocumented Methods Functions
lvplot,qrrvglm-method	Undocumented Methods Functions
lvplot,rrvglm-method	Undocumented Methods Functions
lvplot,uqo-method	Undocumented Methods Functions
lvplot.cao	Undocumented and Internally Used Functions and Classes
lvplot.qrrvglm	Latent Variable Plot for QO models
lvplot.rrvglm	Latent Variable Plot for RR-VGLMs

-- M --

m2adefault	Undocumented and Internally Used Functions and Classes
m2avglm	Undocumented and Internally Used Functions and Classes
Math.SurvS4	Create a Survival Object
Max	Maxima
Max,Coef.qrrvglm-method	Undocumented Methods Functions
Max,qrrvglm-method	Undocumented Methods Functions
Max,uqo-method	Undocumented Methods Functions
Max.Coef.qrrvglm	Undocumented and Internally Used Functions and Classes
Max.qrrvglm	Undocumented and Internally Used Functions and Classes
Maxwell	The Maxwell Distribution
maxwell	Maxwell Distribution Family Function
mbesselI0	Undocumented and Internally Used Functions and Classes
mccullagh89	McCullagh (1989) Distribution Family Function
mckaygamma2	McKay's Bivariate Gamma Distribution
meplot	Mean Excess Plot
meplot,numeric-method	Undocumented Methods Functions
meplot,vlm-method	Undocumented Methods Functions
meplot.default	Mean Excess Plot
meplot.vlm	Mean Excess Plot
micmen	Michaelis-Menten Model
mix2normal1	Mixture of Two Univariate Normal Distributions
mix2poisson	Mixture of Two Poisson Distributions
MNSs	The MNSs Blood Group System
model.frame,vlm-method	Undocumented Methods Functions
model.framevlm	Construct the Model Frame of a VLM Object
model.matrix,qrrvglm-method	Undocumented Methods Functions
model.matrix,vlm-method	Undocumented Methods Functions
model.matrix.qrrvglm	Undocumented and Internally Used Functions and Classes
model.matrixvlm	Construct the Design Matrix of a VLM Object
morgenstern	Morgenstern's Bivariate Distribution Family Function
multinomial	Multinomial Logit Model
my1	Undocumented and Internally Used Functions and Classes
my2	Undocumented and Internally Used Functions and Classes

-- N --

Nakagami	Nakagami Distribution
nakagami	Nakagami Distribution Family Function
namesof	Undocumented and Internally Used Functions and Classes
nbolf	Negative Binomial-Ordinal Link Function
nbolf2	Undocumented and Internally Used Functions and Classes
negbinomial	Negative Binomial Distribution Family Function
nidentity	Identity Link Function
nlminbcontrol	Undocumented and Internally Used Functions and Classes
nloge	Log link function
normal1	Univariate normal distribution
notdocumentedyet	Undocumented and Internally Used Functions and Classes
nreciprocal	Reciprocal link function
ns	Undocumented and Internally Used Functions and Classes
nzc	Chinese Population in New Zealand 1867-2001

-- O --

Ops.SurvS4	Create a Survival Object
Opt	Maxima
Opt,Coef.qrrvglm-method	Undocumented Methods Functions
Opt,qrrvglm-method	Undocumented Methods Functions
Opt,uqo-method	Undocumented Methods Functions
Opt.Coef.qrrvglm	Undocumented and Internally Used Functions and Classes
Opt.qrrvglm	Undocumented and Internally Used Functions and Classes
ordpoisson	Ordinal Poisson Family Function
oxtemp	Oxford Temperature Data

-- P --

Paralogistic	The Paralogistic Distribution
paralogistic	Paralogistic Distribution Family Function
Pareto	The Pareto Distribution
pareto1	Pareto and Truncated Pareto Distribution Family Functions
ParetoI	The Pareto(IV/III/II) Distributions
ParetoII	The Pareto(IV/III/II) Distributions
paretoII	Pareto(IV/III/II) Distribution Family Functions
ParetoIII	The Pareto(IV/III/II) Distributions
paretoIII	Pareto(IV/III/II) Distribution Family Functions
ParetoIV	The Pareto(IV/III/II) Distributions
paretoIV	Pareto(IV/III/II) Distribution Family Functions
pbenini	The Benini Distribution
pbetabin	The Beta-Binomial Distribution
pbetageom	The Beta-Geometric Distribution
pbetanorm	The Beta-Normal Distribution
pbilogis4	Bivariate Logistic Distribution
pbisa	The Birnbaum-Saunders Distribution
pdagum	The Dagum Distribution
persp	Undocumented and Internally Used Functions and Classes
persp,cao-method	Undocumented Methods Functions
persp,qrrvglm-method	Undocumented Methods Functions
persp,uqo-method	Undocumented Methods Functions
persp.cao	Undocumented and Internally Used Functions and Classes
persp.qrrvglm	Perspective plot for QRR-VGLMs
pfisk	The Fisk Distribution
pfrank	Frank's Bivariate Distribution
pfrechet	The Frechet Distribution
pgev	The Generalized Extreme Value Distribution
pggamma	The Generalized Gamma Distribution
pgpd	The Generalized Pareto Distribution
pgumbel	The Gumbel Distribution
phzeta	Haight's Zeta Function
pinv.gaussian	The Inverse Gaussian Distribution
pinvlomax	The Inverse Lomax Distribution
pinvparalogistic	The Inverse Paralogistic Distribution
plaplace	The Laplace Distribution
plgamma	The Log-Gamma Distribution
plino	The Generalized Beta Distribution (Libby and Novick, 1982)
plog	Logarithmic Distribution
plomax	The Lomax Distribution
plot,cao,ANY-method	Undocumented Methods Functions
plot,qrrvglm,ANY-method	Undocumented Methods Functions
plot,uqo,ANY-method	Undocumented Methods Functions
plot,vgam,ANY-method	Undocumented Methods Functions
plot,vglm,ANY-method	Undocumented Methods Functions
plot,vlm,ANY-method	Undocumented Methods Functions
plot,vsmooth.spline,ANY-method	Undocumented Methods Functions
plot.cao	Undocumented and Internally Used Functions and Classes
plotdeplot.lmscreg	Density Plot for LMS Quantile Regression
plotpreplotvgam	Undocumented and Internally Used Functions and Classes
plotqrrvglm	Model Diagnostic Plots for QRR-VGLMs
plotqtplot.lmscreg	Quantile Plot for LMS Quantile Regression
plotvgam	Default VGAM Plotting
plotvgam.control	Control Function for plotvgam()
plotvglm	Undocumented and Internally Used Functions and Classes
plotvlm	Undocumented and Internally Used Functions and Classes
plotvsmooth.spline	Undocumented and Internally Used Functions and Classes
pmaxwell	The Maxwell Distribution
pnaka	Nakagami Distribution
pneumo	Pneumoconiosis amongst a group of coalminers
pnorm2	Undocumented and Internally Used Functions and Classes
poissonff	Poisson Family Function
poissonp	Poisson-points-on-a-plane/volume Distances Distribution
polf	Poisson-Ordinal Link Function
Polono	The Poisson Lognormal Distribution
poly	Undocumented and Internally Used Functions and Classes
Posbinom	Positive-Binomial Distribution
posbinomial	Positive Binomial Distribution Family Function
posnegbinomial	Positive Negative Binomial Distribution Family Function
Posnorm	The Positive-Normal Distribution
posnormal1	Positive Normal Distribution Family Function
Pospois	Positive-Poisson Distribution
pospoisson	Positive Poisson Distribution Family Function
powl	Power Link Function
pparalogistic	The Paralogistic Distribution
ppareto	The Pareto Distribution
pparetoI	The Pareto(IV/III/II) Distributions
pparetoII	The Pareto(IV/III/II) Distributions
pparetoIII	The Pareto(IV/III/II) Distributions
pparetoIV	The Pareto(IV/III/II) Distributions
pposbinom	Positive-Binomial Distribution
pposnorm	The Positive-Normal Distribution
ppospois	Positive-Poisson Distribution
prayleigh	The Rayleigh Distribution
predict	Undocumented and Internally Used Functions and Classes
predict,cao-method	Undocumented Methods Functions
predict,qrrvglm-method	Undocumented Methods Functions
predict,rrvglm-method	Undocumented Methods Functions
predict,uqo-method	Undocumented Methods Functions
predict,vgam-method	Undocumented Methods Functions
predict,vglm-method	Undocumented Methods Functions
predict,vlm-method	Undocumented Methods Functions
predict,vsmooth.spline-method	Undocumented Methods Functions
predict,vsmooth.spline.fit-method	Undocumented Methods Functions
predict.cao	Undocumented and Internally Used Functions and Classes
predict.glm	Undocumented and Internally Used Functions and Classes
predict.lm	Undocumented and Internally Used Functions and Classes
predict.mlm	Undocumented and Internally Used Functions and Classes
predict.qrrvglm	Undocumented and Internally Used Functions and Classes
predict.rrvglm	Undocumented and Internally Used Functions and Classes
predict.uqo	Undocumented and Internally Used Functions and Classes
predict.vgam	Undocumented and Internally Used Functions and Classes
predict.vglm	Predict Method for a VGLM fit
predict.vlm	Undocumented and Internally Used Functions and Classes
predictcao	Undocumented and Internally Used Functions and Classes
predictors	Undocumented and Internally Used Functions and Classes
predictors,vglm-method	Undocumented Methods Functions
predictors.vglm	Undocumented and Internally Used Functions and Classes
predictvsmooth.spline	Undocumented and Internally Used Functions and Classes
prentice74	Prentice (1974) Log-gamma Distribution
print,cao-method	Undocumented Methods Functions
print,Coef.cao-method	Undocumented Methods Functions
print,Coef.qrrvglm-method	Undocumented Methods Functions
print,Coef.rrvglm-method	Undocumented Methods Functions
print,Coef.uqo-method	Undocumented Methods Functions
print,qrrvglm-method	Undocumented Methods Functions
print,rrvglm-method	Undocumented Methods Functions
print,summary.cao-method	Undocumented Methods Functions
print,summary.qrrvglm-method	Undocumented Methods Functions
print,summary.rrvglm-method	Undocumented Methods Functions
print,summary.uqo-method	Undocumented Methods Functions
print,summary.vgam-method	Undocumented Methods Functions
print,summary.vglm-method	Undocumented Methods Functions
print,summary.vlm-method	Undocumented Methods Functions
print,SurvS4-method	Class "SurvS4"
print,uqo-method	Undocumented Methods Functions
print,vgam-method	Undocumented Methods Functions
print,vglm-method	Undocumented Methods Functions
print,vglmff-method	Undocumented Methods Functions
print,vlm-method	Undocumented Methods Functions
print,vsmooth.spline-method	Undocumented Methods Functions
print.SurvS4	Create a Survival Object
probit	Probit Link Function
process.binomial2.data.vgam	Undocumented and Internally Used Functions and Classes
process.categorical.data.vgam	Undocumented and Internally Used Functions and Classes
procVec	Undocumented and Internally Used Functions and Classes
psinmad	The Singh-Maddala Distribution
ptikuv	A Short-tailed Symmetric Distribution
ptpareto	The Truncated Pareto Distribution
ptriangle	The Triangle Distribution
put.smart	Adds a List to the End of the List ``.smart.prediction''
pzibinom	Zero-Inflated Binomial Distribution
pzipf	The Zipf Distribution
pzipois	Zero-Inflated Poisson Distribution

-- Q --

qbenini	The Benini Distribution
qbetanorm	The Beta-Normal Distribution
qbisa	The Birnbaum-Saunders Distribution
qdagum	The Dagum Distribution
qfisk	The Fisk Distribution
qfrechet	The Frechet Distribution
qgev	The Generalized Extreme Value Distribution
qggamma	The Generalized Gamma Distribution
qgpd	The Generalized Pareto Distribution
qgumbel	The Gumbel Distribution
qhzeta	Haight's Zeta Function
qinvlomax	The Inverse Lomax Distribution
qinvparalogistic	The Inverse Paralogistic Distribution
qlaplace	The Laplace Distribution
qlgamma	The Log-Gamma Distribution
qlino	The Generalized Beta Distribution (Libby and Novick, 1982)
qlog	Logarithmic Distribution
qlomax	The Lomax Distribution
qmaxwell	The Maxwell Distribution
qnaka	Nakagami Distribution
qparalogistic	The Paralogistic Distribution
qpareto	The Pareto Distribution
qparetoI	The Pareto(IV/III/II) Distributions
qparetoII	The Pareto(IV/III/II) Distributions
qparetoIII	The Pareto(IV/III/II) Distributions
qparetoIV	The Pareto(IV/III/II) Distributions
qposbinom	Positive-Binomial Distribution
qposnorm	The Positive-Normal Distribution
qpospois	Positive-Poisson Distribution
qrayleigh	The Rayleigh Distribution
qrrvglm-class	Undocumented and Internally Used Functions and Classes
qrrvglm.control	Control function for QRR-VGLMs (CQO)
qsinmad	The Singh-Maddala Distribution
qtikuv	A Short-tailed Symmetric Distribution
qtpareto	The Truncated Pareto Distribution
qtplot	Undocumented and Internally Used Functions and Classes
qtplot,vgam-method	Undocumented Methods Functions
qtplot,vglm-method	Undocumented Methods Functions
qtplot.default	Undocumented and Internally Used Functions and Classes
qtplot.egumbel	Quantile Plot for Gumbel Regression
qtplot.gumbel	Quantile Plot for Gumbel Regression
qtplot.lms.bcg	Undocumented and Internally Used Functions and Classes
qtplot.lms.bcn	Undocumented and Internally Used Functions and Classes
qtplot.lms.yjn	Undocumented and Internally Used Functions and Classes
qtplot.lmscreg	Quantile Plot for LMS Quantile Regression
qtplot.vextremes	Undocumented and Internally Used Functions and Classes
qtplot.vglm	Undocumented and Internally Used Functions and Classes
qtriangle	The Triangle Distribution
quasibinomialff	Quasi-Binomial Family Function
quasiff	Undocumented and Internally Used Functions and Classes
quasipoissonff	Quasi-Poisson Family Function
qzibinom	Zero-Inflated Binomial Distribution
qzipois	Zero-Inflated Poisson Distribution

-- R --

rainfall	Undocumented and Internally Used Functions and Classes
Rayleigh	The Rayleigh Distribution
rayleigh	Rayleigh Distribution Family Function
rbenini	The Benini Distribution
rbetabin	The Beta-Binomial Distribution
rbetageom	The Beta-Geometric Distribution
rbetanorm	The Beta-Normal Distribution
rbilogis4	Bivariate Logistic Distribution
rbisa	The Birnbaum-Saunders Distribution
rcqo	Constrained Quadratic Ordination
rdagum	The Dagum Distribution
rdiric	The Dirichlet distribution
recexp1	Upper Record Values from a 1-parameter Exponential Distribution
reciprocal	Reciprocal link function
recnormal1	Upper Record Values from a Univariate Normal Distribution
resid	Undocumented and Internally Used Functions and Classes
resid,uqo-method	Undocumented Methods Functions
resid,vgam-method	Undocumented Methods Functions
resid,vglm-method	Undocumented Methods Functions
resid,vlm-method	Undocumented Methods Functions
resid,vsmooth.spline-method	Undocumented Methods Functions
residuals	Undocumented and Internally Used Functions and Classes
residuals,qrrvglm-method	Undocumented Methods Functions
residuals,uqo-method	Undocumented Methods Functions
residuals,vgam-method	Undocumented Methods Functions
residuals,vglm-method	Undocumented Methods Functions
residuals,vlm-method	Undocumented Methods Functions
residuals,vsmooth.spline-method	Undocumented Methods Functions
rfisk	The Fisk Distribution
rfrank	Frank's Bivariate Distribution
rfrechet	The Frechet Distribution
rgev	The Generalized Extreme Value Distribution
rggamma	The Generalized Gamma Distribution
rgpd	The Generalized Pareto Distribution
rgumbel	The Gumbel Distribution
rhobit	Rhobit Link Function
rhzeta	Haight's Zeta Function
rig	Reciprocal Inverse Gaussian distribution
rinv.gaussian	The Inverse Gaussian Distribution
rinvlomax	The Inverse Lomax Distribution
rinvparalogistic	The Inverse Paralogistic Distribution
rlaplace	The Laplace Distribution
rlgamma	The Log-Gamma Distribution
rlino	The Generalized Beta Distribution (Libby and Novick, 1982)
rlog	Logarithmic Distribution
rlomax	The Lomax Distribution
rlplot	Undocumented and Internally Used Functions and Classes
rlplot,vglm-method	Undocumented Methods Functions
rlplot.egev	Return Level Plot for GEV Fits
rlplot.gev	Return Level Plot for GEV Fits
rlplot.vextremes	Undocumented and Internally Used Functions and Classes
rlplot.vglm	Undocumented and Internally Used Functions and Classes
rmaxwell	The Maxwell Distribution
rnaka	Nakagami Distribution
rparalogistic	The Paralogistic Distribution
rpareto	The Pareto Distribution
rparetoI	The Pareto(IV/III/II) Distributions
rparetoII	The Pareto(IV/III/II) Distributions
rparetoIII	The Pareto(IV/III/II) Distributions
rparetoIV	The Pareto(IV/III/II) Distributions
rpolono	The Poisson Lognormal Distribution
rposbinom	Positive-Binomial Distribution
rposnegbin	Positive-negative binomial distribution random variates
rposnorm	The Positive-Normal Distribution
rpospois	Positive-Poisson Distribution
rrar	Nested reduced-rank autoregressive models for multiple time series
rrar.control	Undocumented and Internally Used Functions and Classes
rrayleigh	The Rayleigh Distribution
rrvglm	Fitting Reduced-Rank Vector Generalized Linear Models (RR-VGLMs)
rrvglm-class	Class ``rrvglm''
rrvglm.control	Control function for rrvglm
rrvglm.control.Gaussian	Undocumented and Internally Used Functions and Classes
rrvglm.optim.control	Control function for rrvglm() calling optim()
rsinmad	The Singh-Maddala Distribution
rsnorm	Skew-Normal Distribution
rss.vgam	Undocumented and Internally Used Functions and Classes
rtikuv	A Short-tailed Symmetric Distribution
rtpareto	The Truncated Pareto Distribution
rtriangle	The Triangle Distribution
ruge	Rutherford-Geiger Polonium Data
rzibinom	Zero-Inflated Binomial Distribution
rzipois	Zero-Inflated Poisson Distribution

-- S --

s	Defining smooths in VGAM formulae
s.vam	Undocumented and Internally Used Functions and Classes
scale.default	Undocumented and Internally Used Functions and Classes
seq2binomial	The Two-stage Sequential Binomial Distribution Family Function
setup.smart	Smart Prediction Setup
show,cao-method	Undocumented Methods Functions
show,Coef.cao-method	Undocumented Methods Functions
show,Coef.qrrvglm-method	Undocumented Methods Functions
show,Coef.rrvglm-method	Undocumented Methods Functions
show,Coef.uqo-method	Undocumented Methods Functions
show,qrrvglm-method	Undocumented Methods Functions
show,rrvglm-method	Undocumented Methods Functions
show,summary.cao-method	Undocumented Methods Functions
show,summary.qrrvglm-method	Undocumented Methods Functions
show,summary.rrvglm-method	Undocumented Methods Functions
show,summary.uqo-method	Undocumented Methods Functions
show,summary.vgam-method	Undocumented Methods Functions
show,summary.vglm-method	Undocumented Methods Functions
show,summary.vlm-method	Undocumented Methods Functions
show,SurvS4-method	Class "SurvS4"
show,uqo-method	Undocumented Methods Functions
show,vgam-method	Undocumented Methods Functions
show,vglm-method	Undocumented Methods Functions
show,vglmff-method	Undocumented Methods Functions
show,vlm-method	Undocumented Methods Functions
show,vsmooth.spline-method	Undocumented Methods Functions
simple.exponential	Undocumented and Internally Used Functions and Classes
simple.poisson	Undocumented and Internally Used Functions and Classes
simplex	Simplex distribution
Sinmad	The Singh-Maddala Distribution
sinmad	Singh-Maddala Distribution Family Function
size.binomial	Undocumented and Internally Used Functions and Classes
skewnormal1	Univariate Skew-Normal Distribution Family Function
smart.expression	S Expression for Smart Functions
smart.mode.is	Determine What Mode the Smart Prediction is In
smartpred	Smart Prediction
snorm	Skew-Normal Distribution
sratio	Ordinal Regression with Stopping Ratios
stdze1	Undocumented and Internally Used Functions and Classes
stdze2	Undocumented and Internally Used Functions and Classes
studentt	Student t Distribution
summary,cao-method	Undocumented Methods Functions
summary,grc-method	Undocumented Methods Functions
summary,qrrvglm-method	Undocumented Methods Functions
summary,rrvglm-method	Undocumented Methods Functions
summary,uqo-method	Undocumented Methods Functions
summary,vgam-method	Undocumented Methods Functions
summary,vglm-method	Undocumented Methods Functions
summary,vlm-method	Undocumented Methods Functions
summary.cao	Undocumented and Internally Used Functions and Classes
summary.cao-class	Undocumented and Internally Used Functions and Classes
summary.grc	Undocumented and Internally Used Functions and Classes
summary.lms	Undocumented and Internally Used Functions and Classes
summary.qrrvglm	Undocumented and Internally Used Functions and Classes
summary.qrrvglm-class	Undocumented and Internally Used Functions and Classes
summary.rc.exponential	Undocumented and Internally Used Functions and Classes
summary.rrvglm	Undocumented and Internally Used Functions and Classes
summary.rrvglm-class	Undocumented and Internally Used Functions and Classes
Summary.SurvS4	Create a Survival Object
summary.uqo	Undocumented and Internally Used Functions and Classes
summary.vgam-class	Undocumented and Internally Used Functions and Classes
summary.vglm-class	Undocumented and Internally Used Functions and Classes
summary.vlm-class	Undocumented and Internally Used Functions and Classes
summaryvgam	Undocumented and Internally Used Functions and Classes
summaryvglm	Undocumented and Internally Used Functions and Classes
summaryvlm	Undocumented and Internally Used Functions and Classes
Surv	Create a Survival Object
SurvS4-class	Class "SurvS4"

-- T --

terms,vlm-method	Undocumented Methods Functions
terms.vlm	Undocumented and Internally Used Functions and Classes
theta2eta	Undocumented and Internally Used Functions and Classes
Tikuv	A Short-tailed Symmetric Distribution
tikuv	Short-tailed Symmetric Distribution Family Function
tobit	Tobit Model
Tol	Tolerances
Tol,cao-method	Undocumented Methods Functions
Tol,Coef.qrrvglm-method	Undocumented Methods Functions
Tol,Coef.uqo-method	Undocumented Methods Functions
Tol,qrrvglm-method	Undocumented Methods Functions
Tol,uqo-method	Undocumented Methods Functions
Tol.Coef.qrrvglm	Undocumented and Internally Used Functions and Classes
Tol.Coef.uqo	Undocumented and Internally Used Functions and Classes
Tol.qrrvglm	Undocumented and Internally Used Functions and Classes
Tol.uqo	Undocumented and Internally Used Functions and Classes
toxop	Toxoplasmosis Data
Tpareto	The Truncated Pareto Distribution
tpareto1	Pareto and Truncated Pareto Distribution Family Functions
Triangle	The Triangle Distribution
triangle	Triangle Distribution Family Function
trplot	Trajectory Plot
trplot,qrrvglm-method	Undocumented Methods Functions
trplot,uqo-method	Undocumented Methods Functions
trplot.qrrvglm	Trajectory plot for QRR-VGLMs
TypicalVGAMlinkFunction	Link functions for VGLM/VGAM/etc. families

-- U --

uqo	Fitting Unconstrained Quadratic Ordination (UQO)
uqo-class	Undocumented and Internally Used Functions and Classes
uqo.control	Control Function for UQO models
usagrain	USA grain prices

-- V --

vcontrol.expression	Undocumented and Internally Used Functions and Classes
vcov,qrrvglm-method	Undocumented Methods Functions
vcov,rrvglm-method	Undocumented Methods Functions
vcov,vglm-method	Undocumented Methods Functions
vcov,vlm-method	Undocumented Methods Functions
vcov.qrrvglm-class	Undocumented and Internally Used Functions and Classes
venice	Venice Maximum Sea Levels
VGAM	Vector Generalized Linear and Additive Models
vgam	Fitting Vector Generalized Additive Models
vgam-class	Class ``vgam''
vgam.control	Control function for vgam
vglm	Fitting Vector Generalized Linear Models
vglm-class	Class ``vglm''
vglm.control	Control function for vglm
vglm.garma.control	Undocumented and Internally Used Functions and Classes
vglm.multinomial.control	Undocumented and Internally Used Functions and Classes
vglm.multinomial.deviance.control	Undocumented and Internally Used Functions and Classes
vglm.vcategorical.control	Undocumented and Internally Used Functions and Classes
vglmff-class	Class ``vglmff''
vlm	Undocumented and Internally Used Functions and Classes
vlm-class	Undocumented and Internally Used Functions and Classes
vlm.control	Undocumented and Internally Used Functions and Classes
vlmsmall-class	Undocumented and Internally Used Functions and Classes
vnonlinear.control	Undocumented and Internally Used Functions and Classes
vonmises	von Mises Distribution Family Function
vplot	Undocumented and Internally Used Functions and Classes
vplot,factor-method	Undocumented Methods Functions
vplot,list-method	Undocumented Methods Functions
vplot,matrix-method	Undocumented Methods Functions
vplot,numeric-method	Undocumented Methods Functions
vplot.default	Undocumented and Internally Used Functions and Classes
vplot.factor	Undocumented and Internally Used Functions and Classes
vplot.list	Undocumented and Internally Used Functions and Classes
vplot.matrix	Undocumented and Internally Used Functions and Classes
vplot.numeric	Undocumented and Internally Used Functions and Classes
vsmooth.spline	Vector cubic smoothing spline
vsmooth.spline-class	Undocumented and Internally Used Functions and Classes
vsmooth.spline.fit-class	Undocumented and Internally Used Functions and Classes
vvplot.factor	Undocumented and Internally Used Functions and Classes

-- W --

waitakere	Waitakere Ranges Data
wald	Wald Distribution Family Function
weibull	Weibull Distribution Family Function
weights	Undocumented and Internally Used Functions and Classes
weights,vglm-method	Undocumented Methods Functions
weights,vlm-method	Undocumented Methods Functions
weightsvglm	Prior and Working Weights of a VGLM fit
wrapup.smart	Cleans Up After Smart Prediction
wweights	Undocumented and Internally Used Functions and Classes

-- Y --

yeo.johnson	Yeo-Johnson Transformation
yip88	Zero-Inflated Poisson Distribution (Yip (1988) algorithm)

-- Z --

zanegbinomial	Zero-Altered Negative Binomial Distribution
zapoisson	Zero-Altered Poisson Distribution
zero	The zero Argument in VGAM Family Functions
Zeta	The Zeta Distribution
zeta	Riemann's Zeta Function
zetaff	Zeta Distribution Family Function
Zibinom	Zero-Inflated Binomial Distribution
zibinomial	Zero-Inflated Binomial Distribution Family Function
Zipf	The Zipf Distribution
zipf	Zipf Distribution Family Function
Zipois	Zero-Inflated Poisson Distribution
zipoisson	Zero-Inflated Poisson Distribution Family Function

-- misc --

[.SurvS4

Create a Survival Object