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| analogue-package | Analogue methods for palaeoecology |
| analog | Analogue matching |
| analogue | Analogue methods for palaeoecology |
| bayesF | Bayes factors |
| bootstrap | Bootstrap estimation and errors |
| bootstrapObject | Bootstrap object description |
| cma | Close modern analogues |
| dissim | Extract dissimilarity coefficients from models |
| dissimilarities | Extract dissimilarity coefficients from models |
| distance | Flexibly calculate dissimilarity or distance measures |
| fitted.bootstrap.mat | Bootstrap estimation and errors |
| fitted.mat | Modern Analogue Technique transfer function models |
| getK | Extract and set the number of analogues |
| getK.bootstrap.mat | Extract and set the number of analogues |
| getK.default | Extract and set the number of analogues |
| getK.mat | Extract and set the number of analogues |
| join | Merge species data sets on common columns (species) |
| mat | Modern Analogue Technique transfer function models |
| mcarlo | Monte Carlo simulation of dissimilarities |
| minDC | Extract minimum dissimilarities |
| minDC.predict.mat | Extract minimum dissimilarities |
| plot.bayesF | Bayes factors |
| plot.cma | Close modern analogues |
| plot.dissimilarities | Plots the distribution of extracted dissimilarities |
| plot.mat | Plot diagnostics for a mat object |
| plot.mcarlo | Plot Monte Carlo simulated dissimilarity distributions |
| plot.minDC | Plot of minimum dissimilarity per sample |
| plot.roc | Plot ROC curves and associated diagnostics |
| predict.mat | Predict method for Modern Analogue Technique models |
| print.analog | Analogue matching |
| print.bayesF | Bayes factors |
| print.bootstrap.mat | Bootstrap estimation and errors |
| print.cma | Close modern analogues |
| print.fitted.bootstrap.mat | Bootstrap estimation and errors |
| print.fitted.mat | Modern Analogue Technique transfer function models |
| print.mat | Modern Analogue Technique transfer function models |
| print.mcarlo | Monte Carlo simulation of dissimilarities |
| print.minDC | Extract minimum dissimilarities |
| print.predict.mat | Predict method for Modern Analogue Technique models |
| print.residuals.bootstrap.mat | Bootstrap estimation and errors |
| print.residuals.mat | Modern Analogue Technique transfer function models |
| print.roc | ROC curve analysis |
| print.summary.analog | Summarise analogue matching results |
| print.summary.bootstrap.mat | Summarise bootstrap resampling for MAT models |
| print.summary.cma | Summarise the extraction of close modern analogues |
| print.summary.mat | Summarise Modern Analogue Technique models |
| print.summary.predict.mat | Summarise MAT model predictions |
| reconPlot | Stratigraphic plots of palaeoenvironmental reconstructions |
| reconPlot.predict.mat | Stratigraphic plots of palaeoenvironmental reconstructions |
| reconPlot.predict.wa | Stratigraphic plots of palaeoenvironmental reconstructions |
| resid.bootstrap.mat | Bootstrap estimation and errors |
| resid.mat | Modern Analogue Technique transfer function models |
| residuals.bootstrap.mat | Bootstrap estimation and errors |
| residuals.mat | Modern Analogue Technique transfer function models |
| rlgh | Round Loch of Glenhead Diatoms |
| RMSEP | Root mean square error of prediction |
| RMSEP.bootstrap.mat | Root mean square error of prediction |
| RMSEP.bootstrap.wa | Root mean square error of prediction |
| RMSEP.default | Root mean square error of prediction |
| RMSEP.mat | Root mean square error of prediction |
| roc | ROC curve analysis |
| screeplot.bootstrap.mat | Screeplots of model results |
| screeplot.mat | Screeplots of model results |
| summary.analog | Summarise analogue matching results |
| summary.bootstrap.mat | Summarise bootstrap resampling for MAT models |
| summary.cma | Summarise the extraction of close modern analogues |
| summary.mat | Summarise Modern Analogue Technique models |
| summary.predict.mat | Summarise MAT model predictions |
| swapdiat | SWAP sub-fossil diatom and pH training set |
| swappH | SWAP sub-fossil diatom and pH training set |