| %*% |
inner product for matrices and vectors |
| %*%.acomp |
inner product for datasets with a vector space structure |
| %*%.aplus |
inner product for datasets with a vector space structure |
| %*%.default |
inner product for matrices and vectors |
| %*%.rmult |
inner product for datasets with vector scale |
| *.acomp |
Power transform in the simplex |
| *.aplus |
vectorial arithmetic for data sets with aplus class |
| *.rcomp |
Arithmetic operations for compositions in a real geometry |
| *.rmult |
vectorial arithmetic for datasets in a classical vector scale |
| *.rplus |
vectorial arithmetic for data sets with rplus class |
| +.acomp |
Perturbation of compositions |
| +.aplus |
vectorial arithmetic for data sets with aplus class |
| +.rcomp |
Arithmetic operations for compositions in a real geometry |
| +.rmult |
vectorial arithmetic for datasets in a classical vector scale |
| +.rplus |
vectorial arithmetic for data sets with rplus class |
| -.acomp |
Perturbation of compositions |
| -.aplus |
vectorial arithmetic for data sets with aplus class |
| -.rcomp |
Arithmetic operations for compositions in a real geometry |
| -.rmult |
vectorial arithmetic for datasets in a classical vector scale |
| -.rplus |
vectorial arithmetic for data sets with rplus class |
| /.acomp |
Power transform in the simplex |
| /.aplus |
vectorial arithmetic for data sets with aplus class |
| /.rcomp |
Arithmetic operations for compositions in a real geometry |
| /.rmult |
vectorial arithmetic for datasets in a classical vector scale |
| /.rplus |
vectorial arithmetic for data sets with rplus class |
| cdt |
Centered default transform |
| cdt.inv.acomp |
Centered default transform |
| cdt.inv.aplus |
Centered default transform |
| cdt.inv.default |
Centered default transform |
| cdt.inv.rcomp |
Centered default transform |
| cdt.inv.rmult |
Centered default transform |
| cdt.inv.rplus |
Centered default transform |
| cdt.rcomp |
Centered default transform |
| cdt.rmult |
Centered default transform |
| cdt.rplus |
Centered default transform |
| ClamEast |
Color-size compositions of 20 clam colonies from East Bay |
| ClamWest |
Color-size compositions of 20 clam colonies from West Bay |
| clo |
Closure of a composition |
| clr |
Centered log ratio transform |
| clr2ilr |
Convert between clr and ilr, and between cpt and ipt. |
| clrvar2ilr |
Convert between clr and ilr, and between cpt and ipt. |
| CoDaDendrogram |
Dendrogram representation of acomp or rcomp objects |
| composition.missing |
The policy of treatment of missing values in the "compositions" package |
| composition.missings |
The policy of treatment of missing values in the "compositions" package |
| compositions |
library(compositions) |
| compositions.missing |
The policy of treatment of missing values in the "compositions" package |
| compositions.missings |
The policy of treatment of missing values in the "compositions" package |
| convex.rcomp |
Arithmetic operations for compositions in a real geometry |
| cor |
Correlations of amounts and compositions |
| cov |
Variances and covariances of amounts and compositions |
| Coxite |
Compositions, depths and porosities of 25 specimens of coxite |
| cpt |
Centered planar transform |
| Data01 |
Compositions of 25 specimens of hongite |
| Data02 |
Compositions of 25 specimens of kongite |
| Data03 |
Compositions and depth of 25 specimens of boxite |
| Data04 |
Compositions, depths and porosities of 25 specimens of coxite |
| Data05 |
Artic lake sediment samples of different water depth |
| Data06 |
AFM compositions of 23 aphyric Skye lavas |
| Data07 |
Proportions of supervisor's statements assigned to different categories |
| DATA08 |
Household Expenditures |
| Data09 |
Steroid metabolite patterns in adults and children |
| DATA10 |
Activity patterns of a statistician for 20 days |
| Data11 |
White-cell composition of 30 blood samples by two different methods |
| Data12 |
Yatquat fruit evaluation |
| Data13 |
Firework mixtures |
| Data14 |
Color-size compositions of 20 clam colonies from East Bay |
| Data15 |
Color-size compositions of 20 clam colonies from West Bay |
| Data16 |
Serum Protein compositions of blood samples |
| Data17 |
Diagnostic probabilities |
| DATA18 |
Compositions and total pebble counts of 92 glacial tills |
| Data19 |
Honk Kong Pogo-Jumps Championship |
| Data20 |
Proportions of sand, silt and clay in sediments specimens |
| Data21 |
Permeabilities of bayesite |
| Data22 |
Shifts of machine operators |
| Data23 |
Blood samples |
| Data24 |
Measurement of skulls |
| Data25 |
Animal and vegetation measurement |
| DATA31 |
Activity patterns of a statistician for 20 days |
| DiagnosticProb |
Diagnostic probabilities |
| dist |
Distances in variouse approaches |
| dlnorm.rplus |
The multivariate lognormal distribution |
| dnorm.acomp |
Normal distributions on special spaces |
| dnorm.aplus |
Normal distributions on special spaces |
| dnorm.rmult |
Normal distributions on special spaces |
| geometricmean |
The geometric mean |
| getDetectionlimit |
Gets the detection limit stored in the data set |
| Glacial |
Compositions and total pebble counts of 92 glacial tills |
| groupparts |
Group amounts of parts |
| gsi |
Internal functions of the compositions package |
| gsi.add |
Internal functions: Parallel operations of single and multiple datasets |
| gsi.add2pairs |
Internal functions of the compositions package |
| gsi.addclass |
Internal function: give a derived subclass to an object |
| gsi.buildilrBase |
Auxiliary functions to compute user-defined ilr and ipt transforms. |
| gsi.call |
Internal functions of the compositions package |
| gsi.cleanR |
Internal function: Recode missings with IEEE number and vice versa |
| gsi.closespread |
Internal functions of the compositions package |
| gsi.coorInfo |
Internal functions of the compositions package |
| gsi.csum |
Internal function: row and column sums of matrices |
| gsi.diagExtract |
Internal functions: Get the diagonal of a matrix |
| gsi.diagGenerate |
Internal functions: Generate a diagonal matrix |
| gsi.div |
Internal functions: Parallel operations of single and multiple datasets |
| gsi.drop |
Internal functions: A conditional drop |
| gsi.eps |
Internal variable: Negligible differences |
| gsi.eq |
Internal function: Checking equality of IEEE special numbers |
| gsi.expandrcomp |
Internal function: Scaling rcomp |
| gsi.filtercall |
Calling from a function with the own parameters |
| gsi.geometricmean |
The geometric mean |
| gsi.getCoorInfo |
Internal functions of the compositions package |
| gsi.getD |
Interal function: Get number of samples and number of parts in a compositional object |
| gsi.getN |
Interal function: Get number of samples and number of parts in a compositional object |
| gsi.ilrBase |
The canonical basis in the clr plane used for ilr and ipt transforms. |
| gsi.ilrBase2signary |
Auxiliary functions to compute user-defined ilr and ipt transforms. |
| gsi.isSingleRow |
Internal function: Can something be considered as a single multivariate data item? |
| gsi.mapfrom01 |
Internal functions: Storing integers as reals |
| gsi.mapin01 |
Internal functions: Storing integers as reals |
| gsi.mapmax |
Internal functions: Storing integers as reals |
| gsi.mapmin |
Internal functions: Storing integers as reals |
| gsi.margin |
Internal function: Compute a desired compositional margin |
| gsi.merge2signary |
Auxiliary functions to compute user-defined ilr and ipt transforms. |
| gsi.mul |
Internal functions: Parallel operations of single and multiple datasets |
| gsi.optimalilrBase |
Auxiliary functions to compute user-defined ilr and ipt transforms. |
| gsi.OrderIlr |
Auxiliary functions to compute user-defined ilr and ipt transforms. |
| gsi.pairrelativeMatrix |
Internal functions of the compositions package |
| gsi.pairs |
Internal functions of the compositions package |
| gsi.plain |
Internal function: Convert to plain vector or matrix |
| gsi.plotmargin |
Internal functions of the compositions package |
| gsi.plots |
Internal functions of the compositions package |
| gsi.recodeC2M |
Internal function: Recode missings with IEEE number and vice versa |
| gsi.recodeM2C |
Internal function: Recode missings with IEEE number and vice versa |
| gsi.recodeM2Clean |
Internal function: Recode missings with IEEE number and vice versa |
| gsi.reset3D |
Internal functions of the compositions package |
| gsi.rsum |
Internal function: row and column sums of matrices |
| gsi.setCoorInfo |
Internal functions of the compositions package |
| gsi.signary2ilrBase |
Auxiliary functions to compute user-defined ilr and ipt transforms. |
| gsi.simshape |
Internal function: Reshape an object to the shape type of another |
| gsi.spreadToIsoSpace |
Internal functions of the compositions package |
| gsi.sub |
Internal functions: Parallel operations of single and multiple datasets |
| gsi.svdsolve |
Internal function: Solves singular and non square equation systems |
| gsi.textpanel |
Internal function: A panel displaying a label only |
| gsi2.invperm |
Internal function: Invert a permutation |
| idt |
Isometric default transform |
| idt.inv.acomp |
Isometric default transform |
| idt.inv.aplus |
Isometric default transform |
| idt.inv.default |
Isometric default transform |
| idt.inv.rcomp |
Isometric default transform |
| idt.inv.rmult |
Isometric default transform |
| idt.inv.rplus |
Isometric default transform |
| idt.rcomp |
Isometric default transform |
| idt.rmult |
Isometric default transform |
| idt.rplus |
Isometric default transform |
| iit |
Isometric identity transform |
| ilr |
Isometric log ratio transform |
| ilr2clr |
Convert between clr and ilr, and between cpt and ipt. |
| ilrBase |
The canonical basis in the clr plane used for ilr and ipt transforms. |
| ilrBaseList |
The canonical basis in the clr plane used for ilr and ipt transforms. |
| ilrvar2clr |
Convert between clr and ilr, and between cpt and ipt. |
| ilt |
Isometric log transform |
| ipt |
Isometric planar transform |
| is.acomp |
Check for compositional data type |
| is.aplus |
Check for compositional data type |
| is.BDL |
The policy of treatment of missing values in the "compositions" package |
| is.MAR |
The policy of treatment of missing values in the "compositions" package |
| is.MNAR |
The policy of treatment of missing values in the "compositions" package |
| is.MNV |
The policy of treatment of missing values in the "compositions" package |
| is.NMV |
The policy of treatment of missing values in the "compositions" package |
| is.rcomp |
Check for compositional data type |
| is.rmult |
Check for compositional data type |
| is.rplus |
Check for compositional data type |
| is.SZ |
The policy of treatment of missing values in the "compositions" package |
| is.WMNAR |
The policy of treatment of missing values in the "compositions" package |
| is.WZERO |
The policy of treatment of missing values in the "compositions" package |
| isoPortionLines |
Isoportion- and Isoproportion-lines |
| isoProportionLines |
Isoportion- and Isoproportion-lines |
| MAR |
The policy of treatment of missing values in the "compositions" package |
| MARvalue |
The policy of treatment of missing values in the "compositions" package |
| mcor |
Metric summary statistics of real, amount or compositional data |
| mcov |
Metric summary statistics of real, amount or compositional data |
| mean.acomp |
Mean amounts and mean compositions |
| mean.aplus |
Mean amounts and mean compositions |
| mean.col |
The arithmetic mean of rows or columns |
| mean.rcomp |
Mean amounts and mean compositions |
| mean.rmult |
Mean amounts and mean compositions |
| mean.row |
The arithmetic mean of rows or columns |
| mean.rplus |
Mean amounts and mean compositions |
| Metabolites |
Steroid metabolite patterns in adults and children |
| missingProjector |
Returns a projector the the observed space in case of missings. |
| missings |
The policy of treatment of missing values in the "compositions" package |
| missingSummary |
Classify and summarize missing values in a dataset |
| missingType |
Classify and summarize missing values in a dataset |
| mix.2acomp |
Transformations from 'mixtures' to 'compositions' classes |
| mix.2aplus |
Transformations from 'mixtures' to 'compositions' classes |
| mix.2rcomp |
Transformations from 'mixtures' to 'compositions' classes |
| mix.2rmult |
Transformations from 'mixtures' to 'compositions' classes |
| mix.2rplus |
Transformations from 'mixtures' to 'compositions' classes |
| mix.Read |
Reads a data file in a mixR format |
| MNAR |
The policy of treatment of missing values in the "compositions" package |
| MNARvalue |
The policy of treatment of missing values in the "compositions" package |
| msd |
Metric summary statistics of real, amount or compositional data |
| mul.rplus |
vectorial arithmetic for data sets with rplus class |
| mvar |
Metric summary statistics of real, amount or compositional data |