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| gap-package | Genetic analysis package |
| aldh2 | ALDH2 markers and Alcoholism |
| apoeapoc | APOE/APOC1 markers and Schizophrenia |
| BFDP | Bayesian false-discovery probability |
| bt | Bradley-Terry model for contingency table |
| ccsize | Power and sample size for case-cohort design |
| cf | Cystic Fibrosis data |
| chow.test | Chow's test for heterogeneity in two regressions |
| comp.score | score statistics for testing genetic linkage of quantitative trait |
| crohn | Crohn disease data |
| fa | Friedreich Ataxia data |
| fbsize | Sample size for family-based linkage and association design |
| FPRP | False-positive report probability |
| fsnps | A case-control data involving four SNPs with missing genotype |
| gap | Genetic analysis package |
| gc.em | Gene counting for haplotype analysis |
| gcontrol | genomic control |
| gcp | Permutation tests using GENECOUNTING |
| genecounting | Gene counting for haplotype analysis |
| gif | Kinship coefficient and genetic index of familiality |
| hap | Haplotype reconstruction |
| hap.em | Gene counting for haplotype analysis |
| hap.score | Score statistics for association of traits with haplotypes |
| hla | The HLA data |
| htr | Haplotype trend regression |
| hwe | Hardy-Weinberg equlibrium test for multiallelic marker |
| hwe.hardy | Hardy-Weinberg equilibrium test using MCMC |
| kbyl | LD statistics for two multiallelic loci |
| kin.morgan | kinship matrix for simple pedigree |
| makeped | A function to prepare pedigrees in post-MAKEPED format |
| mao | A study of Parkinson's disease and MAO gene |
| mia | multiple imputation analysis for hap |
| mtdt | Transmission/disequilibrium test of a multiallelic marker |
| muvar | Means and variances under 1- and 2- locus (biallelic) QTL model |
| nep499 | A study of Alzheimer's disease with eight SNPs and APOE |
| pbsize | Power for population-based association design |
| pedtodot | Converting pedigree(s) to dot file(s) |
| pfc | Probability of familial clustering of disease |
| pfc.sim | Probability of familial clustering of disease |
| pgc | Preparing weight for GENECOUNTING |
| plot.hap.score | Plot Haplotype Frequencies versus Haplotype Score Statistics |
| pm | Permutation tests using GENECOUNTING |
| pmplus | Permutation tests using GENECOUNTING |
| print.hap.score | Print a hap.score object |
| qqunif | Q-Q plot for uniformly distributed random variable |
| s2k | Statistics for 2 by K table |
| snca | A study of Parkinson's disease and SNCA makers |
| tbyt | LD statistics for two SNPs |
| tscc | Power calculation for two-stage case-control design |
| twinan90 | Classic twin models |
| whscore | Whittemore-Halpern scores for allele-sharing |