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| laser-package | Likelihood Analysis of Speciation/Extinction Rates from Phylogenies |
| agamids | Ultrametric Phylogeny of Australian Agamid Lizards |
| batchgam | Compute Gamma Statistic For Batch of Branching Times |
| bd | Fit Rate-Constant Birth-Death Model to Branching Times |
| calcLHbd | Calculate Likelihood of Branching Times Under Birth-Death Model |
| dAICrc.batch | Generate Null Distribution of dAICrc |
| DDL | Fit Density Dependent Speciation Model to Branching Times |
| DDX | Fit Density Dependent Speciation Model to Branching Times |
| fitdAICrc | Test for Rate Variation Using delta-AICrc Test Statistic |
| fitdAICrc.batch | Generate Null Distribution of dAICrc |
| gamStat | gamStat |
| gamStat.batch | Compute Gamma Statistic For Batch of Branching Times |
| getBtimes | Get Branching Times From Parenthetic-Format Tree ('Newick') |
| getBtimes.batch | Branching Times for Batch of Phylogenies |
| plethodon | plethodon |
| plotLtt | plotLtt |
| pureBirth | pureBirth |
| rtrees5 | Random Phylogenetic Trees |
| rtrees50 | Random Phylogenetic Trees |
| rvbd | Fit Rate-Variable Diversification Model With Extinction to Branching Times |
| scaleBranchingtimes | Scale Branching Times |
| summarydAICrc | Generate Null Distribution of dAICrc |
| truncateTree | Truncate a Set of Branching Times |
| yule-n-rate | yule-n-rate |
| yule2rate | yule-n-rate |
| yule3rate | yule-n-rate |
| yule4rate | yule-n-rate |
| yule5rate | yule-n-rate |
| yuleSim | yuleSim |
| yuleWindow | Fit Yule Model (Pure Birth) to Temporal Window of Branching Times |