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| backward | Forward and Backward Probabilities |
| backward0.mmpp | Markov Modulated Poisson Process - Obsolete Functions |
| Baum.Welch | Discrete Time HMM - Obsolete Functions |
| Baum.Welch.mmpp | Markov Modulated Poisson Process - Obsolete Functions |
| Baum.Welch0.mmpp | Markov Modulated Poisson Process - Obsolete Functions |
| BaumWelch | Estimate Parameters Using Baum-Welch Algorithm |
| bwcontrol | Control Parameters for the Baum Welch Algorithm |
| changes | Changes Made to the Package |
| compdelta | Compute Marginal Distribution of Stationary Markov Chain |
| Demonstration | Demonstration Examples |
| dthmm | Discrete Time HMM Object |
| dthmm.obsolete | Discrete Time HMM - Obsolete Functions |
| Estep | E Step of EM Algorithm |
| Estep.mmpp | Markov Modulated Poisson Process - 2nd Level Functions |
| Estep0.mmpp | Markov Modulated Poisson Process - Obsolete Functions |
| forward | Forward and Backward Probabilities |
| forward0.mmpp | Markov Modulated Poisson Process - Obsolete Functions |
| forwardback | Forward and Backward Probabilities |
| forwardback.mmpp | Markov Modulated Poisson Process - 2nd Level Functions |
| logLik | Log Likelihood of Hidden Markov Model |
| logLikmmpp | Markov Modulated Poisson Process - Obsolete Functions |
| mchain | Markov Chain Object |
| mmglm | Markov Modulated GLM Object |
| mmpp | Markov Modulated Poisson Process Object |
| mmpp.obsolete | Markov Modulated Poisson Process - Obsolete Functions |
| Mstep | M Step of EM Algorithm |
| neglogLik | Negative Log-Likelihood |
| Overview | Overview of Package |
| Pi2vector | Transform Transition or Rate Matrices to Vector |
| probhmm | Conditional Distribution Function |
| Q2vector | Transform Transition or Rate Matrices to Vector |
| residuals | Residuals of Hidden Markov Models |
| residualshmm | Discrete Time HMM - Obsolete Functions |
| sim.hmm | Discrete Time HMM - Obsolete Functions |
| sim.hmm1 | Discrete Time HMM - Obsolete Functions |
| sim.markov | Discrete Time HMM - Obsolete Functions |
| sim.mmpp | Markov Modulated Poisson Process - Obsolete Functions |
| simulate | Simulate Various HMM Processes |
| summary | Summary Methods for Hidden Markov Model Objects |
| Transform.Parameters | Transform Transition or Rate Matrices to Vector |
| vector2Pi | Transform Transition or Rate Matrices to Vector |
| vector2Q | Transform Transition or Rate Matrices to Vector |
| Viterbi | Viterbi Algorithm for Hidden Markov Model Objects |
| Viterbihmm | Discrete Time HMM - Obsolete Functions |