| read.genepop {ARES} | R Documentation |
Imports a genepop formatted file.
read.genepop( filename = "butterfly_borneo" )
filename |
path (absolute or relative) & filename of genepop file to be read. |
The function returns an object that holds information regarding the genepop file.
The output can be used by the function aresCalc.
Scott Davis, based on code by Emiel van Loon
Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J. Heredity, 86, 248-249.
http://wbiomed.curtin.edu.au/genepop/help_input.html
# import of genepop file butterfly_borneo path <- system.file( package = 'ARES' ); file <- paste( list( path, '/data/butterfly_borneo' ), collapse="" ); butterfly_data <- read.genepop( filename=file ); # select fourth population from the imported genepop file I298 <- butterfly_data[[4]]; # the data is accessed through the attribute 'output' output <- aresCalc(I298@output, bootsize=4, maxsize=100); aresPlot(output, T ='I2, 1998'); # note!!! this example uses a very small bootstrap size (for speed of display). # A more realistic size is bootsize=200.