| scan.glm.2D {GenABEL} | R Documentation |
Scans regional data allowing for gene-gene interaction using glm
scan.glm.2D(formula, family = gaussian(), data, snpsubset, idsubset,
bcast = 50)
formula |
character string containing formula to be used in glm.
You should put CRSNP argument in the formula,
to arrange how the SNP from the list would be treated. This allows to
put in an interaction term. |
family |
family to be passed to glm |
snpsubset |
Index, character or logical vector with subset of SNPs to run analysis on.
If missing, all SNPs from data are used for analysis. |
idsubset |
Index, character or logical vector with subset of IDs to run analysis on.
If missing, all people from data/cc are used for analysis. |
data |
object of class "gwaa.data" |
bcast |
show progress every bcast SNPs |
Object of class scan.gwaa.2D-class
Yurii Aulchenko
scan.gwaa.2D-class,
scan.haplo.2D
data(srdta)
a <- scan.glm.2D("bt~sex+age+CRSNP",family=binomial(),data=srdta,snps=(1:10),bcast=2)
plot(a)