| TABR {MIfuns} | R Documentation |
TABR can be used to generate a comma-delimited table of the output from a successful NONMEM run suitable for import into Microsoft Word. TABR can also be used to add 95 analysis of final NONMEM model.
TABR(ProjectDir, i, concurrent = 1, boot = 0, bootres = NULL, btcol = NULL, btcoll = NULL, btcolh = NULL, outname)
ProjectDir |
System path to the directory containing the NONMEM control (*.ctl) streams. |
i |
Control stream number used to generate table file. Should be numeric with no placeholder
zeros to left of number, i.e., "1" not "001".
Example: i=c(1) |
concurrent |
Flag to tell TABR how control streams were executed with (1)- or (0)-sequentially(0).
Flag should be "0" in Windows. Default value is "1". Example: concurrent=1 |
boot |
Flag to describe type of NONMEM run with (0)-normal, (1)-bootstrap, (2)-long runs,
and (3)-bootstrap runs across entire cluster. Flag should be "0" on Windows.
Example: boot=0 |
bootres |
Complete path plus name of bootstrap results file. Default is NULL.
Example: bootres="/Path/to/results/file/filename" |
btcol |
Columns to read from bootres and import into R. Must be numeric vector of numbers.
Example: btcol=c(1:4) |
btcoll |
Column header for bootres column containing lower 95
bootstrap analysis. Must be a character vector. Example: btcoll="P2.5.all" |
btcolh |
Column header for bootres column containing upper 95
bootstrap analysis. Must be a character vector. Example: btcolh="P97.5.all" |
outname |
Name of txt file output by TABR. Run number and "_SumTable.txt" will be appended
to outname variable to create complete file name for txt file output by TABR.
Must be a character vector. Example: outname="/FullPKRes" |
Specific file format required by TABR for bootres if 95
are to be added to comma-delimited table file.
bootres file should be comma-delimited with first row containing headers for the columns
and remaining rows containing bootstrap estimates for each parameter estimated in NONMEM. Columns
should correspond to parameter name, median/average, lower 95
parameter estimated in NONMEM. This should be a summary file generated from the bootstrap analysis of the
NONMEM control stream specified i.
Developed by Metrum Institute (Bill Knebel, Tim Bergsma, and others).
MIfuns package available from Metrum Institute website (http://metruminstitute.org/).