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A B C D E F G I K M O P R S T W
| TIMP-package | a problem solving environment for fitting separable nonlinear models in physics and chemistry applications |
| amp | Class "amp" for diagonal matrix model specification. |
| amp-class | Class "amp" for diagonal matrix model specification. |
| baseIRF | Baseline subtraction from a vector, usually representing an IRF. |
| c001 | Fluorescent lifetime imaging microscopy (FLIM) data |
| c003 | Fluorescent lifetime imaging microscopy (FLIM) data |
| C1 | Ultrafast time-resolved fluorescence data |
| C2 | Ultrafast time-resolved fluorescence data |
| C3 | Ultrafast time-resolved fluorescence data |
| cy005c | Fluorescent lifetime imaging microscopy (FLIM) data |
| cy006 | Fluorescent lifetime imaging microscopy (FLIM) data |
| dat | Class "dat" for model and data storage |
| dat-class | Class "dat" for model and data storage |
| denS4 | Time-resolved absorption data |
| denS5 | Time-resolved absorption data |
| divergeZimage | Plots a matrix with a diverging palette, with the center value of the palettle possible to set |
| donorAcceptorTagged | Fluorescent lifetime imaging microscopy (FLIM) data |
| donorTagged | Fluorescent lifetime imaging microscopy (FLIM) data |
| efit2file | covert 'tim' FORTRAN efit files to plain matrices in ASCII files |
| examineFit | Examines the results of a call to fitModel |
| fit | Class "fit" to store the results of model fitting associated with all datasets analyzed. |
| fit-class | Class "fit" to store the results of model fitting associated with all datasets analyzed. |
| fitModel | Performs optimization of (possibly multidataset) models. |
| FLIMplots | Functions to plot FLIM results. |
| getCLP | Functions to print and return parts of the object returned by the fitting routines. |
| getClpindepX | Generic function getClpindepX in Package ‘TIMP’ |
| getClpindepX,amp-method | Generic function getClpindepX in Package ‘TIMP’ |
| getClpindepX,kin-method | Generic function getClpindepX in Package ‘TIMP’ |
| getClpindepX,mass-method | Generic function getClpindepX in Package ‘TIMP’ |
| getClpindepX,spec-method | Generic function getClpindepX in Package ‘TIMP’ |
| getClpindepX-methods | Generic function getClpindepX in Package ‘TIMP’ |
| getCLPList | Functions to print and return parts of the object returned by the fitting routines. |
| getData | Functions to print and return parts of the object returned by the fitting routines. |
| getdim1 | Functions to print and return parts of the object returned by the fitting routines. |
| getdim2 | Functions to print and return parts of the object returned by the fitting routines. |
| getResid | For data correction, fits a model (but ignores plotting commands) in order to obtain the SVD of the residuals, which then can be used in data-correction. |
| getResiduals | Functions to print and return parts of the object returned by the fitting routines. |
| getResults | Functions to print and return parts of the object returned by the fitting routines. |
| getSVDData | Functions to print and return parts of the object returned by the fitting routines. |
| getSVDResiduals | Functions to print and return parts of the object returned by the fitting routines. |
| getTraces | Functions to print and return parts of the object returned by the fitting routines. |
| getX | Functions to print and return parts of the object returned by the fitting routines. |
| getXList | Functions to print and return parts of the object returned by the fitting routines. |
| initModel | Defines the model to be used in analysis. |
| kin | Class "kin" for kinetic model storage. |
| kin-class | Class "kin" for kinetic model storage. |
| kinopt | Class "kinopt" stores options for fitting and plotting kinetic models |
| kinopt-class | Class "kinopt" stores options for fitting and plotting kinetic models |
| mass | Class "mass" for mass spectrometry model storage. |
| mass-class | Class "mass" for mass spectrometry model storage. |
| massopt | Class "massopt" stores options for fitting and plotting models for mass spectrometry data |
| massopt-class | Class "massopt" stores options for fitting and plotting models for mass spectrometry data |
| mea_IRF | Instrument response for fluorescent lifetime imaging microscopy (FLIM) data |
| modifyModel | Allows the starting values for parameters associated with a model to be updated with the values found in fitting the model. |
| multimodel | Class "multimodel" for storage of multidataset models, data and the results of fitting. |
| multimodel-class | Class "multimodel" for storage of multidataset models, data and the results of fitting. |
| multitheta | Class "multitheta" that stores a list with one element of class "theta" for each dataset modeled. |
| multitheta-class | Class "multitheta" that stores a list with one element of class "theta" for each dataset modeled. |
| onls | Functions to print and return parts of the object returned by the fitting routines. |
| opt | Class "opt" stores options for fitting and plotting |
| opt-class | Class "opt" stores options for fitting and plotting |
| outlierCorr | Finds and removes outliers from a datasets |
| parEst | Functions to print and return parts of the object returned by the fitting routines. |
| plotHistAmp | Functions to plot FLIM results. |
| plotHistNormComp | Functions to plot FLIM results. |
| plotIntenImage | Functions to plot FLIM results. |
| plotNormComp | Functions to plot FLIM results. |
| plotSelIntenImage | Functions to plot FLIM results. |
| plotTau | Functions to plot FLIM results. |
| plotter | Generic function plotter in Package ‘TIMP’ |
| plotter,kin-method | Generic function plotter in Package ‘TIMP’ |
| plotter,mass-method | Generic function plotter in Package ‘TIMP’ |
| plotter,spec-method | Generic function plotter in Package ‘TIMP’ |
| plotter-methods | Generic function plotter in Package ‘TIMP’ |
| preProcess | Performs preprocessing on data stored as an objects of class dat. |
| readclp0 | This function reads in a specification of constraints to zero on the clp. |
| readData | This function reads in data the ivo file format |
| res | Class "res" to store the results of model fitting associated with a single dataset. |
| res-class | Class "res" to store the results of model fitting associated with a single dataset. |
| residPart | Generic function residPart in Package ‘TIMP’ |
| residPart,amp-method | Generic function residPart in Package ‘TIMP’ |
| residPart,kin-method | Generic function residPart in Package ‘TIMP’ |
| residPart,mass-method | Generic function residPart in Package ‘TIMP’ |
| residPart,spec-method | Generic function residPart in Package ‘TIMP’ |
| residPart-methods | Generic function residPart in Package ‘TIMP’ |
| spec | Class "spec" for the storage of spectral models. |
| spec-class | Class "spec" for the storage of spectral models. |
| specopt | Class "specopt" stores options for fitting and plotting spectral models |
| specopt-class | Class "specopt" stores options for fitting and plotting spectral models |
| sumKinSpecEst | Makes a summary plot of spectra associated with kinetic components alongside a plot showing parameter estimates |
| sumnls | Functions to print and return parts of the object returned by the fitting routines. |
| target | Ultrafast time-resolved fluorescence data |
| theta | Class "theta" for storage of nonlinear parameter estimates |
| theta-class | Class "theta" for storage of nonlinear parameter estimates |
| TIMP | a problem solving environment for fitting separable nonlinear models in physics and chemistry applications |
| writeAverage | Writes the average of scans stored in a file to a new file in the 'ivo' format |