Palaeoecological and Palaeogeographical Analysis Tools

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Documentation for package ‘fossil’ version 0.2.0

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fossil-package Palaeoecological and Palaeogeographical Analysis Tools fossil
ACE Abundance- and Incidence-based Coverage Estimators
bootstrap Bootstrap species estimators
bray.curtis Similarity Indices
chao.jaccard Chao's Jaccard and Sorenson Estimators of Shared Species
chao.sd Chao's estimation of standard error
chao.sorenson Chao's Jaccard and Sorenson Estimators of Shared Species
chao1 Chao's Species Estimators
chao2 Chao's Species Estimators
create.lats Creating a table of Latitudes and Longitudes
create.matrix Creating species locality matrices
deg.dist Haversine Distance Formula
dino.dist Creating a Distance Matrix
dino.msn Calculate a Minimum Spanning Tree or Network
dino.mst Calculate a Minimum Spanning Tree or Network
earth.bear Bearings Between Geographic Locations
earth.dist Calculating Geographic Distances
earth.poly Calculating a Minimum Convex Polygon
earth.tri Calculating the Surface Area Enclosed by Three Geographic Points
fossil Palaeoecological and Palaeogeographical Analysis Tools fossil
ICE Abundance- and Incidence-based Coverage Estimators
int.chao Internal function for chao estimators
jaccard Similarity Indices
jack1 First- and second-order jacknife estimators
jack2 First- and second-order jacknife estimators
lats2Shape Converting a Table of Latitudes and Longitudes to a Shapefile
loc.map Mapping Points on a Global Map
morisita.horn Similarity Indices
msn.map Mapping a Minimum Spanning Tree
msn2Shape Convert a Minimum spanning Network or Tree to Shapefile
mstlines Display a Minimum Spanning Tree or Network
new.lat.long Find a New Latitude and Longitude
nmds.mst Creating NMDS plots with overlain Minimum Spanning Trees
sac Calculate Species Area Curves
simpson Similarity Indices
sorenson Similarity Indices
spp.est Estimating Species Diversity