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| compareGraphs | Compare two graphs in terms of TPR, FPR and TDR |
| condIndFisherZ | Conditional Independence by Fisher's Z-Transformation |
| corGraph | Computing the correlation graph |
| dag2cpdag | Convert a DAG to a CPDAG |
| decHeur | Decision Heuristic: Should robust method for PC-algorithm be used? |
| getNextSet | Iteration through a list of all combinations of choose(n,k) |
| mcor | Compute Correlation Matrix |
| pcAlgo | PC-Algorithm: Estimate the Underlying Graph (Skeleton) or Equivalence Class (CPDAG) of a DAG |
| pcAlgo-class | Class "pcAlgo" |
| pcorOrder | Compute Partial Correlations |
| pcSelect | PC-Select: Estimate subgraph around a response variable |
| pcSelect.presel | PC-Select preselection: Estimate subgraph around a response variable using preselection |
| pdag2dag | Extend a PDAG to a DAG |
| plot,pcAlgo-method | Class "pcAlgo" |
| randomDAG | Generate a Directed Acyclic Graph (DAG) randomly |
| rmvDAG | Generate Multivariate Data according to a DAG |
| shd | Compute Structural Hamming Distance (SHD) |
| show,pcAlgo-method | Class "pcAlgo" |
| summary,pcAlgo-method | Class "pcAlgo" |
| udag2pdag | Extend a pcAlgo-object containing a skeleton to a PDAG |
| zStat | Conditional Independence by Fisher's Z-Transformation |