| mif-methods {pomp} | R Documentation |
Methods of the "mif" class.
## S4 method for signature 'mif': logLik(object, ...) conv.rec(object, ...) ## S4 method for signature 'mif': conv.rec(object, pars, ...) pred.mean(object, ...) ## S4 method for signature 'mif': pred.mean(object, pars, ...) pred.var(object, ...) ## S4 method for signature 'mif': pred.var(object, pars, ...) filter.mean(object, ...) ## S4 method for signature 'mif': filter.mean(object, pars, ...) ## S4 method for signature 'mif': plot(x, y = NULL, ...) compare.mif(z)
object |
The mif object. |
pars |
Names of parameters. |
x |
The mif object. |
y |
Ignored. |
z |
A mif object or list of mif objects. |
... |
Further arguments (either ignored or passed to underlying functions). |
conv.rec(object, pars = NULL) returns the columns of the convergence-record matrix corresponding to the names in pars.
By default, all rows are returned.
loglik slot.
mif object or a list of mif objects, compare.mif produces a set of diagnostic plots.
x is a mif object, plot(x) is equivalent to compare.mif(list(x)).
pred.mean(object, pars = NULL) returns the rows of the prediction-mean matrix corresponding to the names in pars.
By default, all rows are returned.
pred.var(object, pars = NULL) returns the rows of the prediction-variance matrix corresponding to the names in pars.
By default, all rows are returned.
filter.mean(object, pars = NULL) returns the rows of the filtering-mean matrix corresponding to the names in pars.
By default, all rows are returned.
predvarplot(object, pars = NULL, mean = FALSE, ...) produces a plot of the scaled prediction variances for each parameter.
This can be used to diagnose a good value of the mif parameters CC and T0.
If used in this way, one should run mif with Nmif=1 first.
Additional arguments in ... will be passed to the actual plotting function.
mif object.
mif object.
pfilter-mif.
Aaron A. King (kingaa at umich dot edu)
E. L. Ionides, C. Bret{'o}, & A. A. King, Inference for nonlinear dynamical systems, Proc. Natl. Acad. Sci. U.S.A., 103:18438–18443, 2006.
mif, pomp, pomp-class, pfilter