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| QDG-package | Implements the QDG algorithm |
| acyclic | Acyclic graph example |
| compute.mu | Utilities for internal use with qdg library |
| cyclica | Cyclic graph (a) example |
| cyclicb | Cyclic graph (b) example |
| cyclicc | Cyclic graph (c) example |
| generate.data | Generate graph data for examples |
| generate.data.graph.a | Generate graph data for examples |
| generate.data.graph.b | Generate graph data for examples |
| generate.data.graph.c | Generate graph data for examples |
| glxnet | Generate and graph Glx network |
| plot.qdg | Plot a directed graph |
| print.qdg.perm.test | Conduct permutation test for LOD score of edge direction on directed graph |
| print.qdgAlgo | Produces a directed graph using QDG algorithm |
| print.qdgSEM | Score directed graphs outputed by qdgAlgo using structural equation models (SEM) |
| produce.qtl.sample | Generate graph data for examples |
| QDG | Implements the QDG algorithm |
| qdg.perm.test | Conduct permutation test for LOD score of edge direction on directed graph |
| qdgAlgo | Produces a directed graph using QDG algorithm |
| qdgSEM | Score directed graphs outputed by qdgAlgo using structural equation models (SEM) |
| summary.qdg.perm.test | Conduct permutation test for LOD score of edge direction on directed graph |
| summary.qdgAlgo | Produces a directed graph using QDG algorithm |
| summary.qdgSEM | Score directed graphs outputed by qdgAlgo using structural equation models (SEM) |