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| GillespieSSA-package | Gillespie Stochastic Simulation Algorithm package |
| GillespieSSA | Gillespie Stochastic Simulation Algorithm package |
| ssa | Invoking the stochastic simulation algorithm |
| ssa.btl | Binomial tau-leap method (BTL) |
| ssa.btl.diag | Binomial tau-leap method (BTL) for nu-diagonalized systems |
| ssa.check.args | Validates the arguments for the ssa wrapper function |
| ssa.check.method | Validates consistency of the system definition |
| ssa.d | Direct method (D) |
| ssa.d.diag | Direct method (D) for nu-diagonalized systems |
| ssa.etl | Explicit tau-leap method (ETL) |
| ssa.etl.diag | Explicit tau-leap method (ETL) for nu-diagonalized systems |
| ssa.nutiling | Direct method nu-diagonalization mapping |
| ssa.otl | Optimized tau-leap method (OTL) |
| ssa.otl.diag | Optimized tau-leap method (OTL) for nu-diagonalized systems |
| ssa.plot | Simple plotting of ssa output |
| ssa.run | Higher-level interface to the method functions |
| ssa.terminate | Terminates a simulation that was invoked using ssa |