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| MCMCglmm-package | Multivariate Generalised Linear Mixed Models |
| commutation | Commutation Matrix |
| Ddivergence | d-divergence |
| Dexpressions | List of unevaluated expressions for (mixed) partial derivatives of fitness with respect to linear predictors. |
| Dtensor | Tensor of (mixed) partial derivatives |
| evalDtensor | Evaluates a list of (mixed) partial derivatives |
| inverseA | Inverse Relatedness Matrix and Phylogenetic Covariance Matrix |
| knorm | (Mixed) Central Moments of a Multivariate Normal Distribution |
| KPPM | Kronecker Product Permutation Matrix |
| krzanowski.test | Krzanowski's Comparison of Subspaces |
| kunif | Central Moments of a Uniform Distribution |
| list2bdiag | Forms the direct product from a list of matrices |
| MCMCglmm | Multivariate Generalised Linear Mixed Models |
| PlodiaPO | Phenoloxidase measures on caterpillars of the Indian meal moth. |
| PlodiaR | Resistance of Indian meal moth caterpillars to the granulosis virus PiGV. |
| PlodiaRB | Resistance (as a binary trait) of Indian meal moth caterpillars to the granulosis virus PiGV. |
| plotsubspace | Plots covariance matrices |
| posterior.mode | Estimates the mode of a vector using kernel density estimation |
| prunePed | Pedigree pruning |
| Ptensor | Tensor of Sample (Mixed) Central Moments |
| rbv | Random Generation of MVN Breeding Values and Phylogenetic Effects |
| rIW | Random Generation from the Conditional Inverse Wishart Distribution |
| sm2asreml | Converts sparseMatrix to asreml's giv format |
| Tri2M | Lower/Upper Triangle Elements of a Matrix |