Wavelet Changepoint Detection for Array CGH

Documentation for package ‘WaveCGH’ version 2.01

WaveCGH-package	Finding chromosomal gain/loss regions using wavelet method.
ACF.plot	Plot ACF for the fitted residuals
arrayCGH	Array CGH data
BenjaminiHochburg	Finds significant features using false discovery rate (FDR).
BreakMeans	Finds break means in a series using wavelet method.
BreakMeansChr	Finds break means in individual chromosomes.
MeansBreakPoints	Finds the region means for given break points.
PlotAllOneModel	Plots all gain and loss regions in one one plot.
PlotLattice	Plots all gain and loss regions in separate plots for chromosomes.
PlotLatticeOneModel	Plots all gain and loss regions in separate plots for each chromosome.
PvalBootMean	Finds p-values for testing means using bootstrap method.
PvalBootMeanChr	Finds p-values for testing means in individual chromosomes.
PvalBootOneModel	Finds the p-values for testing means
SimulateError	Simulating AR(p) error series.
SymmetricMA	Smoothing a series using moving average.
Unique	Finding the unique values in the original order.
WaveCGH	Finding chromosomal gain/loss regions using wavelet method.