Simulation and analysis of spatial structure of population genetics data

Documentation for package ‘Geneclust’ version 1.0.0

Geneclust-package	Bayesian clustering and MCMC inference in spatial population genetics
FormatGenotypes	Formatting file of genotype data.
Fst	F statistics
Geneclust	Bayesian clustering and MCMC inference in spatial population genetics
geneclust	Bayesian inference of population structure using multilocus genotypes and spatial coordinates
mcmcgeneclust	MCMC inference of population structure using multilocus genotypes
postclassif	Posterior membership probabilities and cluster assignment
postfis	Posterior distribution of inbreeding coefficients
postpsi	Posterior distribution of the spatial interaction parameter
setplot	Set graphical parameters for geographical maps so as to have equal ratio for horizontal and vertical axis. Internal function.
simpatch	Simulate geo-referenced multilocus data sets
simpottsdir	Simulation of data from the Potts-Dirichlet model on an irregular lattice
subsample	Make a subsample from an initial dataset
tablecst	A normalization constants table to make MCMC inference on the Potts-Dirichlet model spatial interaction parameter