| AffineCnPlm {aroma.affymetrix} | R Documentation |
Package: aroma.affymetrix
Class AffineCnPlm
Object
~~|
~~+--Model
~~~~~~~|
~~~~~~~+--UnitModel
~~~~~~~~~~~~|
~~~~~~~~~~~~+--MultiArrayUnitModel
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--ProbeLevelModel
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--AffinePlm
~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~+--AffineSnpPlm
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~+--SnpPlm
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~+--CnPlm
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~+--AffineCnPlm
Directly known subclasses:
public static class AffineCnPlm
extends CnPlm
AffineCnPlm(..., combineAlleles=FALSE)
... |
Arguments passed to AffineSnpPlm. |
combineAlleles |
If FALSE, allele A and allele B are treated
seperately, otherwise together. |
Methods:
No methods defined.
Methods inherited from CnPlm:
getCellIndices, getChipEffectSet, getCombineAlleles, getProbeAffinityFile, setCombineAlleles
Methods inherited from SnpPlm:
getCellIndices, getChipEffectSet, getMergeStrands, getProbeAffinityFile, setMergeStrands
Methods inherited from AffineSnpPlm:
getAsteriskTags
Methods inherited from AffinePlm:
getAsteriskTags, getProbeAffinityFile
Methods inherited from ProbeLevelModel:
calculateResidualSet, calculateWeights, fit, getAsteriskTags, getCalculateResidualsFunction, getChipEffectSet, getProbeAffinityFile, getResidualSet, getWeightsSet
Methods inherited from MultiArrayUnitModel:
getListOfPriors, setListOfPriors, validate
Methods inherited from UnitModel:
findUnitsTodo, getAsteriskTags, getFitSingleCellUnitFunction
Methods inherited from Model:
fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson (http://www.braju.com/R/)