| subset.scanoneperm {qtl} | R Documentation |
Pull out results for a specified set LOD columns from
permutation results from scanone.
## S3 method for class 'scanoneperm': subset(x, lodcolumn, ...)
x |
Permutation results from
scanone, run with n.perm>0. |
lodcolumn |
A vector specifying which LOD columns to keep (or, if
negative), omit. These should be between 1 and the number of LOD
columns in the input x. |
... |
Ignored at this point. |
The input scanone permutation results, but with only the specified
subset of the data.
Karl W Broman, kbroman@biostat.wisc.edu
summary.scanoneperm,
scanone, c.scanoneperm,
cbind.scanoneperm,
rbind.scanoneperm
data(fake.bc) fake.bc <- calc.genoprob(fake.bc, step=5) operm <- scanone(fake.bc, method="hk", pheno.col=1:2, n.perm=25) operm2 <- subset(operm, lodcolumn=2)