Synthesizing List of Differentially Expressed Features

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Documentation for package ‘sdef’ version 1.2

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sdef-package Synthesizing List of Differentially Expressed Features
baymod Bayesian model for the ratio of observed to expected probability of genes to be in common
createTable Function to create an output table
designCount Internal function
designMatrix Internal function
extractGenes.R Extracting the lists of genes of interest
extractGenes.T Extracting the lists of genes of interest
ratio Ratio T between the observed genes in common and the expected ones
sdef Synthesizing List of Differentially Expressed Features
simulation Simulate p-values for two related experiments
simulation.indep Simulate p-values for two indipendent experiments
Tmc Empirical null distribution of max(T)