Analysis of data from aCGH experiments

[Package List] [Top]

Documentation for package ‘ADaCGH’ version 1.3-13

Help Pages

cghE1 A fictitious aCGH data set
cghMCRe A fictitious aCGH data set
doMCR Find minimal common regions
mpiInit Initialized a cluster of workstations
pSegment Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentACE Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentBioHMM Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentCGHseg Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentDNAcopy Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentGLAD Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentHaarSeg Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentHMM Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentPSW Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentWavelets Parallelized/"unified" versions of several aCGH segementation algorithms/methods
segmentPlot Segment plots for aCGH
SegmentPlotWrite Segment aCGH data, plot, and write out results
summary.ACE Gains/loss and FDR from an ACE object
summary.ACE.array Gains/loss and FDR from an ACE object
tempdir2 Create a directory for output
writeResults Write results to an external file
writeResults.adacghGLAD Write results to an external file
writeResults.CGH.ACE.summary Write results to an external file
writeResults.CGH.PSW Write results to an external file
writeResults.CGH.wave Write results to an external file
writeResults.CGHseg Write results to an external file
writeResults.DNAcopy Write results to an external file
writeResults.mergedBioHMM Write results to an external file
writeResults.mergedHMM Write results to an external file
writeResults.summaryACE Write results to an external file