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| genediff | Raw p-value calculation function |
| GetLMObj | Function to get a simple lm object for a regression on the relevant model. |
| glog | Generalized log transformation function |
| jggrad2 | Generating Jacobian-corrected data |
| jglog | Glog |
| LMGene | LMGene main function |
| lnorm | Lowess normalization function |
| lnormeS | Function to apply lowessnorm to a transformed expression set. Returns the normalized expression set. |
| mlm2lm | Linear Model converting function |
| msa | Relative mean square calculation function |
| msecalc | MSE calculation function |
| msecalcmult | MSE calculation function |
| neweS | Coercing to an ExpressionSet code |
| norm | Additive normalization function |
| psmeans | Function to take means of probesets. |
| pvadjust | P-value adjusting function |
| rowaov | Gene by gene ANOVA function |
| rowlist | Gene name listing function |
| sample.eS | Sample array data for LMGene |
| sample.ind | Sample probeset index vector |
| sample.mat | Sample array data for LMGene package |
| tranest | Glog transformation parameter estimation function |
| tranest2 | Glog transformation parameter estimation function 2 |
| tranestmult | Glog transformation parameter estimation function for multiple parameters |
| transeS | Function to apply the glog transform to an expression set. Returns the transformed expression set (not normalized). |
| vlist | Sample experimental data for LMGene package |